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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtaccaagcagtttaacactatctgccctttcgaaaatcgtaagcaccatcttcggattgccttggggctttctttggcaattgctcatgctgatg...

Basic information

species Zea mays
transcript GRMZM2G019812_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18180597|gb|BM381807.1|BM381807
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcagGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
EST: gi|60351922|gb|DN218895.1|DN218895
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcagGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
EST: gi|148956071|gb|EC901822.2|EC901822
EST:     GCATGTCAAGCCAGCAGTTGGTGGATTTCATCCGCGAGCATATAGACACA                         GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcagGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
EST: gi|14244484|gb|BG842495.2|BG842495
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcagGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
EST: gi|3157148|gb|AA979770.1|AA979770
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcagGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
EST: gi|18964420|gb|BM660995.1|BM660995
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcagGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCT
EST: gi|9742960|gb|BE519108.1|BE519108
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         T
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcag-
EST: gi|9742960|gb|BE519108.1|BE519108
EST:     GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA                         T
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... cgaagtgcag-