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gtataatagcttcttttttagcatgtctaccttctgaccacttcattggtaatttggagcaaatgatgtgaacagaaattatgattgtgttgtttcagAATGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCAAGCACTTGGAGATAAGATAAATCAGTTTAGTGGCATAATAGAAGGCTTAATTTGG
species | Zea mays |
transcript | GRMZM2G019812_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTATGCAGCTGGTGACCTGGGTGCTGCTGTCCACAGAGCTTACTTCAG AAATGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCAAGCACEST: gi|5005990|gb|AI712052.1|AI712052
genomic: GCCTATGCAGCTGGTGACCTGGGTGCTGCTGTCCACAGAGCTTACTTCAGgtataatagc ... gttgtttcagAA-TGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCAAGCAC
EST: GCCTATGCAGCTGGTGACCTGGGTGCTGCTGTCCACAGAGCTTACTTCAG AATGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCANGCACT
genomic: GCCTATGCAGCTGGTGACCTGGGTGCTGCTGTCCACAGAGCTTACTTCAGgtataatagc ... gttgtttcagAATGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCAAGCACT
cattggtaatttggagcaaatgatgtgaacagaaattatgattgtgttgtttcagAATGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCAAGCACTTGGAGATAAGATAAATCAGTTTAGTGGCATAATAGAAGGCTTAATTTGG
ttgtttc CT-rich tract
aaattatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatagcttcttttttagcatgtctaccttctgaccacttcattggtaatttggagcaaatgatgtgaacagaaattatgattgtgttgtttcagAATGGATGAAATGATGCGAGGTCAAAGAGGATGGCGGGAACTTCAAGCACTTGGAGATAAGATAAATCAGTTTAGTGGCATAATAGAAGGCTTAATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT