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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttctccctgataacaaggggttcttgcttcaacatgattattgcttttgtcagaagtaacagcagtatcctctgggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA

Basic information

species Zea mays
transcript GRMZM2G019812_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18180597|gb|BM381807.1|BM381807
EST:     GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
genomic: GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
EST: gi|60351922|gb|DN218895.1|DN218895
EST:     GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
genomic: GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
EST: gi|148956071|gb|EC901822.2|EC901822
EST:     GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTGGATTTCATCCGCGAGCATATAGA
genomic: GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
EST: gi|14244484|gb|BG842495.2|BG842495
EST:     ATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
genomic: ATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
EST: gi|3157148|gb|AA979770.1|AA979770
EST:     GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
genomic: GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
EST: gi|18964420|gb|BM660995.1|BM660995
EST:     GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
genomic: GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
EST: gi|9742960|gb|BE519108.1|BE519108
EST:     GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTG                         GGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA
genomic: GAGCTATGTGATGACGACGAATTCATTGTTTTGGCATGCGATGGCATCTGgtaaatttct ... gggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacatgattattgcttttgtcagaagtaacagcagtatcctctgggttattagGGACTGCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA
                         aagtaac  putative branch site (score: 2)
                                       tcctctg  putative PPT
     atgattatt  TA-rich tract