1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAACCAGAGCTCGAGGCAGAGAGAGAGAGGATACGGAGTGCAGGCGGTTTCGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttcactcgcttcttctcgttcgtacctgacaccttacctgatggtcttgcttgcatatgccaaatgccttttcag
species | Zea mays |
transcript | GRMZM2G019812_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCG GAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCCEST: gi|148956071|gb|EC901822.2|EC901822
genomic: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttca ... gccttttcagGAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCC
EST: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCG GAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCCEST: gi|3157148|gb|AA979770.1|AA979770
genomic: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttca ... gccttttcagGAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCC
EST: GTAAATGGAAATCTAAACTTGTCAAGAGCTATCG GAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCCEST: gi|18964420|gb|BM660995.1|BM660995
genomic: GTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttca ... gccttttcagGAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCC
EST: CGTTCTAATGGGGCGTGTAAATGGAAATCTAANCTTGTCAAGAGCTATCG GAGACATGAAGTTCAANCAAANCAAGTTCTTGCCCCCCGATAAGCAAATCCEST: gi|9742960|gb|BE519108.1|BE519108
genomic: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttca ... gccttttcagGAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCC
EST: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCG GAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCC
genomic: CGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttca ... gccttttcagGAGACATGAAGTTCAAACAAAACAAGTTCTTGCCCCCCGATAAGCAAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCAGAGCTCGAGGCAGAGAGAGAGAGGATACGGAGTGCAGGCGGTTTCGTTCTAATGGGGCGTGTAAATGGAAATCTAAACTTGTCAAGAGCTATCGgtattcttcactcgcttcttctcgttcgtacctgacaccttacctgatggtcttgcttgcatatgccaaatgccttttcag
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