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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcacctctgattgtgttaactagcgttgttttttcttcactaccgatcttccttggacgctaaccaagccttttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCATGCATGGCTCTCGGAGTCTTGGACTCTTGGTACATATAGGCCTGACGCTG

Basic information

species Zea mays
transcript GRMZM2G019812_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18180597|gb|BM381807.1|BM381807
EST:     GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCA                         TGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
genomic: GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCAgtgagtcacc ... ttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
EST: gi|60351922|gb|DN218895.1|DN218895
EST:     GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCA                         TGGGGCCCACGAGAACGGCTCTGGTA
genomic: GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCAgtgagtcacc ... ttatgaccagTGGGGCCCACGAGAACGGCTCTGGTA
EST: gi|148956071|gb|EC901822.2|EC901822
EST:     GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCA                         TGGGGCCCACGAGAACGGCTTTGGTAAGCAGGTGTAGGGAAGACGTGGCAT
genomic: GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCAgtgagtcacc ... ttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
EST: gi|14244484|gb|BG842495.2|BG842495
EST:     GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCA                         TGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
genomic: GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCAgtgagtcacc ... ttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
EST: gi|3157148|gb|AA979770.1|AA979770
EST:     GACNCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCA                         TGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
genomic: GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCAgtgagtcacc ... ttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT
EST: gi|110218905|gb|EC900803.1|EC900803
EST:     GACGCCAGCGGTGCAGAACCAGCTGGAGACGTTGGGTGCTGTGAGACCCA                         TGGGGCCCACGAGAACGGCTTTGGTAAGCAGGTGTAGGGAAGACGTGGCAT
genomic: GACGCCAGCGGTGCAGAACCAGCTGGAGACGCTGGGTGCTGTGAGACCCAgtgagtcacc ... ttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttcttcactaccgatcttccttggacgctaaccaagccttttatgaccagTGGGGCCCACGAGAACGGCTCTGGTAAGCAGGTGTAGCGAAGACGTGGCATGCATGGCTCTCGGAGTCTTGGACTCTTGGTACATATAGGCCTGACGCTG
                              cgctaac  putative branch site (score: 2)
                                         ccttttat  putative PPT
                                           ttttatga  TA-rich tract