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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaaatatcagagctcttttgaatagttctgccattgatgttaactgattgaagttgtgcttttctagAGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAG

Basic information

species Zea mays
transcript GRMZM2G018756_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018756_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g42720.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------------------gtaagtaaaatatcagagctcttttgaat--agttctgccattgatgttaa-----ctgattga---agttgtgcttttctagAGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAG
                                                                   |  |    |  || |  | ||||  ||    ||     || |  | | |     |||||| |    |   |  |||| |||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||| 
gtaagtaagaagtttgatgtttttctaatggccaggccatcttgttttcttttcctgcttgttgcccagttgggttggcatatttatttttcatcttatttcatgatagtagctcagtgttctgattaacttggccttatttttttagAGCTTCATTATTGCAATTTGTGCCATTGTGATGGCCACATTTTCTACTGGAATCGACACCAGATCCTTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010754|gb|DT937924.1|DT937924
EST:     GCCACTCTCATATGAAAATTGCCCAGGATGGCGATTCAGCTACTATCGTT                         AGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGA
genomic: GCCACTCTCATATGAAAATTGCCCAGGATGGCGATTCAGCTACTATCGTTgtaagtaaaa ... gcttttctagAGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttttgaatagttctgccattgatgttaactgattgaagttgtgcttttctagAGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAG
                                            tgcttttct  CT-rich tract
     ttgaata  TA-rich tract