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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAGgttagtctgcatcacctggaactattgaaaaggttgtaattttggcattcctaggaagcgtttccacttccataatgcaaaatattctgtgctaatatttctttttccattcactgttctgcaaacatagccttgtatagtgcagtttgcttgatgttaatttcatactatgcgcatgtgtag

Basic information

species Zea mays
transcript GRMZM2G018756_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018756_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g42720.1 (Oryza sativa), 5'ss of exon 7
GTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAGgt--tagtc--tgcatcacctggaactattgaaaaggttgtaattttggcattcctaggaagcgtttccacttccataatgcaaaatattctgtgctaatatttctttttccattcactgttctgcaaacatagccttgtatagtgcagtttgcttgatgttaatttcatactatgcgcatgtgtag
|| ||||||||||| ||||| ||||| |||||| | | ||||||||| |||||||||||||| || ||||||||||  || |   || |    ||      | |   ||  |     || || | |   |    | |  ||     | |||| || |                                                                                                        
GTCAACGAGGGTCTCCTCTCGTCTGGAATCATGGGCTTATATATTGTGTTCCTTTGTTGGTCGGCGCTCCACAGgtactaatttttgtactcactctggtcacttttaacttaactcttctgacgtgttttatgatcactt-----ttcatattgtag-------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G018756_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 7
GTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAGgttagtctgcatcacctggaactattgaaaaggttgtaattttggcattcctaggaagcgtttccacttccataatgcaaaatattctgtgctaatatttctttttccattcactgttctgcaaacatagccttgtatagtgcagtttgcttgatgttaatttcatactatgcgcatgtgtag
|| ||    |||||  | ||||| |||||||||  ||| |||||||||||||| |||||||||||  ||   |||||||     ||| |    ||  |||  || |    |   || | |     | |       | ||| |||  | |      | |  || |   ||| || |                                                                                  
GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttag---aaatctctcccaaacattctaa-gtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010754|gb|DT937924.1|DT937924
EST:     GGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAG                         TGAGCCGCAAACTGGGAAGTGCCACTCTCATATGAAAATTGCCCAGGATGG
genomic: GGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAGgttagtctgc ... gcatgtgtagTGAGCCGCAAACTGGGAAGTGCCACTCTCATATGAAAATTGCCCAGGATGG