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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAGgtaagtttattactctcaatttttatctataaggggggacgcagagtgtcgaagacgtctcacatgagtgaggtctagataagaaataaaccgatacaaa...

Basic information

species Zea mays
transcript GRMZM2G018756_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018756_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os04g42720.1 (Oryza sativa), 5'ss of exon 9
AGCTTCATTATCGCAATTTGTTCCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAGgtaagtttattactctcaatttttatctataaggggggacgcagagtgtcgaagacgtctcacatgagtgaggtctagataagaaataaac-cgatacaaa-
||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |||      ||||   |   |  | ||   | | ||    | |    | | | | |||  ||  |||     | | || |  |     | |||     
AGCTTCATTATTGCAATTTGTGCCATTGTGATGGCCACATTTTCTACTGGAATCGACACCAGATCCTTCCAAgtaggtt-gcccttctctgctagcaagtttataagtgaacaatcaatagtaacgtcct-tcaagtggatgaaactgaaacaatatctctcttcaatattgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010754|gb|DT937924.1|DT937924
EST:     CCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAG                         TTTCGGAATGATAAAGTACAATTGGATGAGGACATCCCCTACAGCTACGAG
genomic: CCATTGTAATGGCCACGTTTTCTACTGGAATCGACACCAAATCCTTCCAGgtaagtttat ... tcattctcagTTTCGGAATGATAAAGTACAATTGGATGAGGACATCCCCTACAGCTACGAG