Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acggtaactaacaagtaaaattctgtaaaacttttgggtctttgccctgcctgaaatgtacaaggtttgtgattttagttcatttttgtttgctgagaagGTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAG

Basic information

species Zea mays
transcript GRMZM2G018756_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018756_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g42720.1 (Oryza sativa), 3'ss of exon 6
---------acggtaactaacaagtaaaattctgtaaaacttttgggtctttgccctgcctgaaatgtacaaggtttgtgattttagttcatttttgtttgctgagaagGTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAG
          | | | ||  |   |||||    | |           | || ||     |  |    |  | | | ||  |||| | ||  |  | ||||||   |||||| ||||||||||| ||||| ||||| |||||| | | ||||||||| |||||||||||||| || ||||||||
tctcttgatgctgcatctctcggttaaaaactggcagcgg----aaattttagcatgttcctaggattgtatgatctg-aatttgaatttgtaat-gtttgc---gaagGTCAACGAGGGTCTCCTCTCGTCTGGAATCATGGGCTTATATATTGTGTTCCTTTGTTGGTCGGCGCTCCACAG

upper sequence: GRMZM2G018756_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv05s0051g00380.t01 (Vitis vinifera), 3'ss of exon 6
acggtaactaacaagtaaaattctgtaaaacttt--tgggtctttgccctgcctgaaatgtacaaggtttgtgattttagttcatttttgtttgctgagaagGTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAG
    |   |      |    || | | |   ||     |||   |  |        | |       || | |||| |  | | ||||   |     ||  |||| ||    |||||  | ||||| |||||||||  ||| |||||||||||||| |||||||||||  ||   ||
--ttttttttttccttctctttttatcatgtttcaccaggttcctatcaacataatagtcattgtagtctctgatatgtgattatttggatgcttagaacagGTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010754|gb|DT937924.1|DT937924
EST:     GGACGGCAATCTTGGTGACTATAATGATGGCAGTATCATTGCACTCCAAG                         GTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTC
genomic: GGACGGCAATCTTGGTGACTATAATGATGGCAGTATCATTGCACTCCAAGgtacgaagat ... tgctgagaagGTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcctgaaatgtacaaggtttgtgattttagttcatttttgtttgctgagaagGTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAG
                                     tttttgttt  CT-rich tract
                          attttagttcattttt  TA-rich tract