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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCGTGGCATTCTGGATGTTGGATTCTGAAGTCTCTTGTGTATGCCATGTCGATCGGCATCCCATTTATCATCCCTAACATCTTCATCCAATTTTATGgtaagttctgtgcagtactgtggctgtgtggcaaacgtcgttgctgtagatgtaagatatcttgggcataagtgaatgtgcagcagttatagagtgggaa...

Basic information

species Zea mays
transcript GRMZM2G018756_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018756_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g42720.1 (Oryza sativa), 5'ss of exon 3
AATTCGTGGCATTCTGGATGTTGGATTCTGAAGTCTCTTGTGTATGCCATGTCGATCGGCATCCCATTTATCATCCCTAACATCTTCATCCAATTTTATGgtaagttc----tgtgcagtactgtggctgtgtggcaaa-cgtcgttgctgtagatgtaagatatcttgggc-ataagtgaatgtgcagcagttatagagtgggaa
||||||||||||||||| || ||||||||||||| ||||||||||||| |||| |||  |||||| |||||  |||| ||||||||||||||  | |||||||||||     ||| |||| |  ||   || ||   |  |  ||| ||  |      |   |  | ||  | | ||||| |  ||| ||||    ||| ||  | 
AATTCGTGGCATTCTGGGTGCTGGATTCTGAAGTTTCTTGTGTATGCCGTGTCAATCATCATCCCGTTTATTGTCCCCAACATCTTCATCCAGCTGTATGgtaagtttcttttgtccagttc-atgatcgtttgtttattcaacgtggcactctgctcagagtgacctgtaccacaagtgtagttgctgcag----agaatgcaa-