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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCGTTGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttgcggcgtcttgaatcttttccgatcattacctctcaaatagcagatcgtactttctgatcatgcaagctttcacacatcactattttcagt...

Basic information

species Zea mays
transcript GRMZM2G013981_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013981_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 5
TTCCGTTGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttgcggcgtcttgaatcttttccgatcattacctctcaaatagcagatcgtactttctgatcatgcaagctttcacacatcactat-tttcagt------
 ||| | |||||  | || |||||||||||||||||||| |||||||| ||||| |  || ||||| |||||||| ||||||||  | |||||||| |||||||||||| | ||| || | | |||    ||   |     ||||||||||  ||| ||||| ||||| |||| |  |||||  | |||  || |||||||      
CTCCATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATCATATAAGAGCTGTTGATCCTCCATTCGATTACATCATTGGAACTGATGTTgtaagtttt-ctgcg-ctggcagctt----gagtttggtgcctcaaatagcttatcctacttactgat-atgctaaatttcatgcgtcatgatatttcagttgttct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592994|gb|CV072140.1|CV072140
EST:     ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT                         GTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
EST: gi|78075859|gb|DV504293.1|DV504293
EST:     ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT                         GTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA