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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCAAACTCCAAGCACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctttgagttccaggccttcctgcacaagttgatgtgggtaaatctaatcatgtgaacaaaaatatatttgttgaaactgtctctgatcacatc...

Basic information

species Zea mays
transcript GRMZM2G013981_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013981_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g57330.1 (Oryza sativa), 5'ss of exon 3
GATCCAAACTCCAAGCACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttcttt------gagttccaggccttcctgcacaagttgatgtgggtaaatct---aatcatgtgaacaa--aaatatatttgttgaaactgtctctgatcacatc
||||| ||||| |||||||  || |||||||||||||||||||| |||||||| |||||||| |||||||| ||||       || | |   ||  ||||| ||||||||| |  | ||||| |   |||||||  ||       |  |||| | |||  ||  ||           
GATCCTAACTCGAAGCACCTCGGAACCACGGTCTGGGATGCATCCATGGTGTTCGTCAAGTTCTTGgtaatctcttctctttggactactgagctatcctgtacaagttgaagcagataaatgtgataatcatgcaaattgctggaactattcggtgatgctccct-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211407963|gb|FL261717.1|FL261717
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
EST: gi|211407967|gb|FL261721.1|FL261721
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
EST: gi|51592994|gb|CV072140.1|CV072140
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
EST: gi|211407968|gb|FL261722.1|FL261722
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
EST: gi|211405412|gb|FL261716.1|FL261716
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
EST: gi|211407964|gb|FL261718.1|FL261718
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
EST: gi|211405411|gb|FL261715.1|FL261715
EST:     ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTG                         GAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG
genomic: ACCATGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTTTTGgtaatttctt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGCTTTTGTCCGTCCAAACTAAAAGGAAAG