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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGTTACAACAACTGACCAAGCCGAGGTGCTCCCACTGCTTATGAGAAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaagagaaccatctattatgccattcctagttctgtttcattagttctcacagctgtagttttagatataatcatatggtattgtagtttttgaaataaatacatagggattatgttaagtaaattgttctttagttctgacagatatattggcaaacacaaaaacag

Basic information

species Zea mays
transcript GRMZM2G013981_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013981_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 4
GGTGATGTTACAACAACTGACCAAGCCGAGGTGCTCCCACTGCTTATGAGAAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaagagaaccatctattatgccattcctagttctgtttcattagttctcacagctgtagttttagatataatcatatggtattgtagtttttgaaataaatacatagggattatgttaagtaaattgttctttagttctgacagatatattggcaaacacaaaaacag
 |||| ||    ||||| |||||||  ||||||||||| |||||| |||| ||||||||||| |||| ||||||||| ||||| || ||| | ||||||||| | ||||    |     | |  |||    |||    ||  |  |||| ||  | | |  || |   |  |  |||  ||||   |     ||||   ||| | || |                                                                  
TGTGACGTGGTTACAACAGACCAAGTTGAGGTGCTCCCGCTGCTTTTGAGGAATGTTGAACGCAACAAATCTTGGATTTCACAGTCAAACTCTGACTCAGgtct-gttatctaagta--caaaaatgaatgtcc--actcattaccatt-gtctttatacatgaaacat--gccatagccatagtttgaaagagttaa-gaacttaaga------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211407963|gb|FL261717.1|FL261717
EST:     AAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAG                         ATTCCGTTGGCTNCA-TTACAGTTGCAGAATTGGACTGGGGGGACAAAGAA
genomic: AAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaa ... acaaaaacagATTCCGTTGGCT-CAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAA
EST: gi|51592994|gb|CV072140.1|CV072140
EST:     AAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAG                         ATTCCGTCGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAAC
genomic: AAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaa ... acaaaaacagATTCCGTTGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAAC
EST: gi|211405412|gb|FL261716.1|FL261716
EST:     AAATGTTGAACGGWACAGATCTTGGATCTCACAATCGAACCCCGACTCAG                         ATTCCGTTGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAAC
genomic: AAATGTTGAACGGAACAGATCTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaa ... acaaaaacagATTCCGTTGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAAC
EST: gi|211405411|gb|FL261715.1|FL261715
EST:     AATGTTGAACGGAACAGATTCTTGGATCTCACAATCGAACCCCGACTCAG                         AT-CCGTTGGCTC
genomic: AATGTTGAACGGAACAGAT-CTTGGATCTCACAATCGAACCCCGACTCAGgttttgttaa ... acaaaaacagATTCCGTTGGCTC