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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcagatgtttagtagcatagctgtagtcgagtgtaacaggatcgatggtttagtgataacagagtgacttaatttctccttcatctgtacatgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGGTAGCCTCTGTCCCCCTTTCCAGAG

Basic information

species Zea mays
transcript GRMZM2G013981_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013981_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 3'ss of exon 5
--agcagatgtttagtagcatagctgtagtcgagtg-taacaggatcgatggtttagtgataacagagtgacttaatttctccttcatctgtacatgttc-aagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGGTAGCCTCTGTCCCCCTTTCCAGAG
  ||||||  |   | || |||||   |    | || |||||| |  | | ||  || || ||   | || ||||  | ||| ||  |||||   | ||  ||||||||||| || |||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||                         
ttagcagaaat---gcagaatagccaaaaataattgataacagcactggtagtccagagacaatgcaatggctta-ctgctcttttgtctgtgtgtttttgaagGTTTATTCAGAACATCTGTTGCAACCTCTAATGGAGACAATCATTGCATTATCTGGTCCTAAAACAAAAATAATG-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592994|gb|CV072140.1|CV072140
EST:     ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT                         GTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
EST: gi|78075859|gb|DV504293.1|DV504293
EST:     ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT                         GTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtttagtgataacagagtgacttaatttctccttcatctgtacatgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGGTAGCCTCTGTCCCCCTTTCCAGAG
                      acttaattt  TA-rich tract