Sequence
atgc intronic sequence ATGC exonic sequenceTGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgtgttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 6
TGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgt-gttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaactt-gcctgtgatgaatctag------------------------------------------------------------------------
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TGGGGTTGAGAAAGGAAATCTGAGGGAGCTAGCATTAGCTCGAATGGATGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGgttattatatagaactggttttgtttggga-attttctgtagtggttt----tgtttgggaattttctgtagcaaagattgcaaatgctttgaaattctgctgacacaatttgttcacttgatacctttttggagcaccaacaaacattttgtatttctctttag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G18150.1 (Glycine max), 5'ss of exon 6
TGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgt-gttgcacacaactatgttcacttgacatgttatt-tataaaagtttacaa-caatttgaaatccttgt----taacttgcctgtgatgaatctag------------------------------------
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TGGGGTTGAGAAAGGAAATCTGCGGGAGCTGGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGgttattatatataactggttctgtttggaaaatttctgtagcaaagattgcaaatgatttgaaattctgctgacacaatttgttcactagatacctttttgggacaccaacaaacattttgtatttctctgcag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 6
TGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgtgttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctag
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AGGGGTAGAAAAAGGAAATCTTCGTGAACTGGCTCTAGCCAGAATGGATGACTTGGGCCTTAAATGCCGTGATGTCCGTACTCGTGAAGCTGGAATTCAGgtcgcgatgtcaattgttgtttcttcctttgttttgttgttgtaaatactgaatttcctaacaaaagctagcttgtatggtctgagtacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27583114|gb|CB005809.1|CB005809EST: ACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAG GACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGAT
genomic: ACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgtgttgcaca ... atgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgtgttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA