Sequence
atgc intronic sequence ATGC exonic sequencegtgttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G36790.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------gtgttgcacacaactatgttcacttgacatgttatttataaaa---gtttac-----aacaatttgaaatccttgttaacttgcctgtgatgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATAC
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gttattatatagaactggttttgtttgggaattttctgtagtggttttgtttgggaattttctgtagcaaagattgcaaatgctttgaaattctgctgacacaatttgttcacttgatacctttttggagcaccaacaaacattttgtatttctctttagGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACAC
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G18150.1 (Glycine max), 3'ss of exon 6
-----------------------------------gtgttgcacacaactatgttcacttgacatgttatttataaaa---gtttacaa-----caatttgaaatccttgttaacttgcctgtgatgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATAC
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gttattatatataactggttctgtttggaaaatttctgtagcaaagattgcaaatgatttgaaattctgctgacacaatttgttcactagatacctttttgggacaccaacaaacattttgtatttctctgcagGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATCAGGGTTGGGAAACATTTCTATCATATGAAGATACAC
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATAC
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gtcgcgatgtcaattgttgtttcttcctttgttttgttgttgtaaatactgaatttcctaacaaaagctagcttgtatggtctgagtacagGACATTCATCATAAAATTAAGCCAGAACAAGTAGAGCTTGTGCGTCGTGATTACACTGCCAATGAAGGTTGGGAGACGTTCCTTTCTTATGAAGATACACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27583114|gb|CB005809.1|CB005809EST: ACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAG GACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGAT
genomic: ACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGgtgttgcaca ... atgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATAC
tgttaac putative branch site (score: 2)
aatttgaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgttgcacacaactatgttcacttgacatgttatttataaaagtttacaacaatttgaaatccttgttaacttgcctgtgatgaatctagGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT