Sequence
atgc intronic sequence ATGC exonic sequence...atcattgtaattgaagaccatgtcattttgcaagttagtggtatctccttccactgacacatattatttaatatattcttgtccttttttaatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 3'ss of exon 3
-------------------------atcattgtaattgaagaccatg-tcattttgcaagttagtggtatc---tccttccactgacacatattatttaatatattcttgtccttttttaatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
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gtaagatcatttgacaatctaaactacccatatgcttaggttccttgatggttctgtatgatttccccatgaaacatctttattaacttcagttctataaactattgttgtctttcctcaaaattacagGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTACCCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCA
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G36790.1 (Glycine max), 3'ss of exon 3
atcattgtaattgaag--accatgtcattttgcaagttagtggtatctccttccactgacacatattatttaatatattcttgtccttttttaatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
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attgatttagtgaaaacattctgggaaatttgtgtggcaatagcgtggtgtaacacatctatgatgagcttatcaagttctg--cacttttaaatttatcagGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGACGTTGCT
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G18150.1 (Glycine max), 3'ss of exon 3
atcattgtaattgaa--gaccatgtcattttgcaagttagtggtatctccttccactgacac-atattatttaatatattcttgtccttttttaatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
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---gatttagtgaaaacgttctgggaaatttacatggcaatagtgtggtgtaacacatctatgatgagcttttatcaaattctgcactttttaaatttaacagGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAAGATGTTGCT
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 3'ss of exon 3
atcattgtaattgaagaccatgtcattttgcaagttagtggtatctccttccactgacacatattatttaatatattcttgtccttttttaa--tctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
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-ttgttattttcattgatcat-tcattatggagtctagtctctaatctctgaagattcaaatatcagaatacattctctaatctgttttaaaaattcaccagGAGGCCAGATTACTGCCTTGGACCTCATTTACGACAAATGCTGATTTACGGTTGCACCCGGCTAGAGATAGGTGTCCAGAGCACATATGAAGATGTTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71881670|gb|DT030725.1|DT030725EST: GCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAAC GAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGG
genomic: GCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttact ... aatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccttccactgacacatattatttaatatattcttgtccttttttaatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
ttcttgtcctttttta CT-rich tract
atattatttaatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcattgtaattgaagaccatgtcattttgcaagttagtggtatctccttccactgacacatattatttaatatattcttgtccttttttaatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - aattgaa
- - - - - - - - -ccatgtc
- - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - ccttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac