Sequence
atgc intronic sequence ATGC exonic sequenceAGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcctgttcaataagctggcaactgcatggctcaatgagaaagcaataattacatccatgtcctgtttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 5'ss of exon 5
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaa-atgtcattcc-tgttcaataagctggcaactgcatggctcaatgagaaagcaataattacatccatgtcctgtttgcag------------------------------------
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AATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGgtacttattttatctagcacttgatattctag--attgctagtcttgtgttcactgttgtgtttgttctctagaactttttagtgagaacttaggccctgccaatgtttgttgtgtttcag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G100872_T01 (Zea mays), 5'ss of exon 5
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcctgttcaataagctggcaactgcatggctcaatgagaaagcaataattacatcca--tgtcctgtttgcag----------------------------------------------------------------
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AGTTTTTTGAAAGTCCAGCATTCCGGGCTGATGGTCTGAAGATTTATCCAACACTTGTTATTCGTGGAACTGGTCTTTATGAGCTCTGGAAAACTGGCAGgtacttctctaatctagtatcattcagtgtc--ttgaat--cttataaacattcctgtggttatttctaattttacagtaagaacttctgtacttatgacaagggctcataaatccagggttaacccggtaacttttgctgtgctgcag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G359735_T01 (Zea mays), 5'ss of exon 5
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcc--tgttcaataagctggcaactgcat-----ggctcaatgagaaagcaataattac--atccatgtcctgtttgcag--------
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AATTTTTTGGAAGTCCAGCGTTCCGGGCTGATGGTCTGAAGATTTATCCAACACTTGTGATTCGTGGAACTGGTCTTTATGAGCTCTGGAAAACTGGCAGgtactcctctaatctagtgtcctgctaaatcttacttacgttcttggggttatttttaaatcttaaggtaagaacttatatactaatgacaagtcaggtt
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 5
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaa----atgtcattcctgttcaataagctggcaactgc----atggctcaatgagaa----agcaataattacatccatgtcctgtt-tgcag-----------------------------------
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AGTTTTTTGAGAGCCCCATGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGgtatatatcaaatgttttcttattattggactgctttttcctcaaacatctcaattttcatcttagtatttattagttttttttaatgtcctgtagaaattaaaaaaaaaaattcattaatgtaattgtag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G18150.1 (Glycine max), 5'ss of exon 5
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcctgttcaata---agctggcaactgc----atggctcaatgagaa----agcaataatta-catccatgtcctgtttgcag-----------------------------
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AGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGgtata-tatcaattttttttaatattggactgctttttcctcaaacttctcaattttcatcttagtatttattagtttttttaaatggtctgtagaaagtaaaaaaacattaatataattgtag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcctgttcaataagctggcaactgcatggctcaatgagaaagcaataattacatccatgtcctgtttgcag
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AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacgatactcttg-tgtttaa-agatgaatgcttgcatgtcacaacggaaaaggttaaatcatattgaaaattt--ctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110386507|gb|EC951107.1|EC951107EST: ACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAG GTATAGGAATTACCCACCTGAGCAACTTGTAGACATTGTAGCAAGAATTCT
genomic: ACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtc ... ctgtttgcagGTATAGGAATTACCCACCTGAGCAACTTGTAGACATTGTAGCAAGAATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcctgttcaataagctggcaactgcatggctcaatgagaaagcaataattacatccatgtcctgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT