Sequence
atgc intronic sequence ATGC exonic sequenceTACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttactatttgccctctttgaaatgggaattcacatcatcttcatccctatgctgaacattggtcttagttagattcaaatttcctataattttct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 5'ss of exon 3
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttactatttgccctctttgaaatgggaattcacatcatcttcatccctatgctgaac-attggtcttagttagattcaaatttcctataattttct-------------------------------
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TTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACgtaag--atcatttgacaa-tctaaactacccatatgcttaggttccttgatggttctgtatgatttccccatgaaacatctttattaacttcagttctataaactattgttgtctttcctcaaaattacag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G100872_T01 (Zea mays), 5'ss of exon 3
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttactatttgccctctttgaaatgggaattcacatcatcttcatccctatgctgaacattggtcttagt---------tagattcaaatttcctataattttct------------------
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TTCATGATGCTTTGTCGGGGCACACTTCAGCAAATGTTGAGGAGGCTATTTGTTATTCCGAACATAGTGCTGTCAAATGTATTGGTATGACGATTGAAACgtaagt----atcatcgcataattggatggtgcttcttattacttcaattcaaaaggaatgtgttgcctttcccacttccctatgaatttaatcccaatgaaatgtttttttctctcggaattctag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 3
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagt-----------------tactatttgcc----ctctttgaaatgggaattcacatcatcttcatccctatgctgaacattggtcttagttagat--tcaaatttcctataattttct--
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TTCATGATGCTTTATCGGGTCACACTTCTGCAAATGTTGAGGAGGCTATTTGTTATTCGGAACATAGTGCTGTCAAATGTATTGGTATGACGATTGAGACgtaagtatcatcgcagaattggatgttgcttatcacttttcattcaaaaggaaagtgttgtcttttccgtcctag----ggacttcaatcccagtgaaatgtttttttttatcttggaattctag
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 3
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttactatttgccctc----tttgaaa--tgggaattcacatcatcttcatccctatgctgaacattggtcttagttagattcaaatttcctataattttct
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TTCATGATGCTTTGTCTGGACACACATCTGCTAATGTGGAAGAGGCTGTGGCATACTCTGAGCATGGGGCAACCAAGTGTATTGGTATGACGATTGAAACgtaagttgttaatatttgtgaaagtttggagccttggtctgctggtcaagtacagttacgtgtctgtttctttttttggtta-ataaaaataatgcatggt-----
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G18150.1 (Glycine max), 5'ss of exon 3
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttactatttgccctctttgaaatggga-attcacatcatcttcatccctatgctgaacattggtcttagttagattcaaatttcctataattttct----
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TTCATGATGCTTTGTCTGGACACACATCTGCCAATGTGGAAGAGGCAGTGGCTTACTCTGAGCATGGGGCAACCAAGTGTATTGGCATGACAATTGAAACgtaagttgctgtttaggtatatacatttgcaatatttgtgaaagtttggagccttggtc---tgctggtcatg--tacagttatgtgtctttttcttttttggtt
upper sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 3
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttac---tatttgccctctttgaaatgggaattcacatcatcttcatccctatgctgaacattggtcttagttagattcaaatttcctataattttct
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TTCATGATGCTTTATCAGGACACACTTCTGCCAACGTTGAAGAGGCAGTTGCTTACTCTGAACATAGTGCAACTAAATGCATTGGGATGACAATTGAAACgtgagttcgatgcagtaatcatgtacaacatctaaatttgaa--atctgtcttttttgcctcaatgttttctctaaaagccttcatagtatctatatattga-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71881670|gb|DT030725.1|DT030725EST: GCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAAC GAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGG
genomic: GCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttact ... aatctatcagGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACgtgagttactatttgccctctttgaaatgggaattcacatcatcttcatccctatgctgaacattggtcttagttagattcaaatttcctataattttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgggaa