1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcatttctccaacatgatctttaaggttttggtcaagagagttccaacttaaacttcttttcccccttttctgaagttggactttacctctataaacttctctgtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTGTTCATGGGAGTGCATTGGGTGCTAAAGAAGTAGATGCAACAAGGAAGA
species | Vitis vinifera |
transcript | Vv16s0022g01440.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|77581088|gb|DV219469.1|DV219469
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351041306|gb|FQ447433.1|FQ447433
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|29785592|gb|CB342748.2|CB342748
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGATATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|110718593|gb|EE095602.1|EE095602
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|77584013|gb|DV221048.1|DV221048
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351028127|gb|FQ426028.1|FQ426028
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351033600|gb|FQ447759.1|FQ447759
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351025444|gb|FQ435136.1|FQ435136
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|110699426|gb|EE076412.1|EE076412
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351033112|gb|FQ446465.1|FQ446465
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|71858646|gb|DT007701.1|DT007701
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: AAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|349827934|gb|FQ422802.1|FQ422802
genomic: AAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|110687936|gb|EE065912.1|EE065912
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351017442|gb|FQ435795.1|FQ435795
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351017776|gb|FQ436129.1|FQ436129
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|351027164|gb|FQ440031.1|FQ440031
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|30255737|gb|CB971869.1|CB971869
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTEST: gi|33406481|gb|CF212108.1|CF212108
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
EST: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAG GTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
genomic: CTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtcatttctc ... gtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGT
tttcccccttttctgaagttggactttacctctataaacttctctgtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTGTTCATGGGAGTGCATTGGGTGCTAAAGAAGTAGATGCAACAAGGAAGA
cttctctgttt CT-rich tract
tataaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatttctccaacatgatctttaaggttttggtcaagagagttccaacttaaacttcttttcccccttttctgaagttggactttacctctataaacttctctgtttatgcagGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTGTTCATGGGAGTGCATTGGGTGCTAAAGAAGTAGATGCAACAAGGAAGA
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