Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctgctgttccttgaaacttaattcaatgtctgtatgttagaatgctaataaccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA

Basic information

species Vitis vinifera
transcript Vv16s0022g01440.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g04270.1 (Oryza sativa), 3'ss of exon 2
---------gttggctgctgttccttgaaacttaa---ttcaatgtctgtatgt-tagaatgct-aataaccggtccttatgtgttattgc-ttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
          |   |||  | || | | | ||| |   ||| |||  || ||   || |   || |||     |   |  ||| |  || | || | |||| |||||||||||||||||||| ||||| |||||  |||||  ||  ||||||||  |||||||  | |||||||| || ||||  |||||||| || ||
gtctgtcatctcaactgaagctcatagcacctttaagtttctatgcttgaatacatacagaactgaatgtttcggtttcttgtttggtttcgttctgtagGACCTCTTGGTCAGGGTATTGCAAATGCAGTTGGGCTGGCCCTTGCTGAGAAGCACCTGGCTGCTCGTTTCAACAAGCCCGACAGCGAGATTGTTGATCA

upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G033208_T01 (Zea mays), 3'ss of exon 2
---------gttggctgctgttccttgaa--acttaattcaatgtctgtatgttagaatgctaataa---ccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
          ||  ||  ||  |  ||||  |       |  |  ||||    || ||  || | ||     ||   |  | | |  ||||| |   ||| ||||||||||||||||| |||||||| ||||| |||||   ||  ||||||||  |||||||  | |||||||| ||||||| |||||| ||||||||
gtctgttttcttctctattgggctgtgaattagccgtgccccttgctgtgctgtataaaactgagaaagtttgggtttcctatatggttgctgt-gcagGGCCTCTTGGTCAGGGTATCGCCAATGCCGTTGGGTTGGCACTTGCTGAGAAGCACCTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCA

upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G03200.1 (Glycine max), 3'ss of exon 2
-------gttggctgctgttcct-tgaaacttaattcaatgtctgtatgttagaatgctaataaccggtc-cttatgtgttattgct---tttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
        |  | |   |||  | | | |    | | | | | | ||| ||  | |  || |      |   ||||   ||||||||   ||| |||| |||||||||||||| ||||||||||||||||||||||||  ||  |||||||| ||||||||||||| |||||| ||||||||||||||||| |||||
gtttgatatgagttagagtttgtataatagaatagtaattctttttattttttatttttattgtttatttatttatccattattgctatttttgtagGTCCTCTTGGTCAGGGGATTGCCAATGCTGTTGGTTTGGCCCTTGCAGAGAAGCACTTGGCTGCAAGATACAACAAGCCTGACAATGAGATTGTTGACCA

upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G43990.1 (Glycine max), 3'ss of exon 2
gttggctgctgt-tccttgaaacttaattcaatgtctgtatgttagaatgctaataaccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
||| | || |   |   |  |  ||| |   ||    ||  |      ||||     | | | |||||   | |    || | |||| |||||||||||||| ||||||||||||||||| || ||    |  |||||||| ||||||||| |||| ||||| ||||||||||||||||| |||||
gttagatgtttcattggtttatgttactgttatcatggtgagcctttttgctgtgttctgttgcttatcc-tcacgttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGATTAGCACTAGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCA

upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G38720.1 (Glycine max), 3'ss of exon 2
gttggctgctgt-tccttgaaacttaattcaatgtctgtatgttagaatgctaataaccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
||| | |  |   |   |  |  ||| |   ||    ||  |      ||||     | | | |||||   |  |   || | |||| |||||||||||||| ||||||||||||||||| || ||    |  ||||| || ||||||||| |||| ||||| ||||||||||||||||| |||||
gttagatatttcattagtttatgttattgttatcatagtgagcctttttgctgtgtcctgttgcttatcc-tcgtgttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCA

upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G45290.1 (Arabidopsis thaliana), 3'ss of exon 2
gttggct-gctgttccttgaaacttaattcaatgtctgt--atgttagaatgctaataaccggtccttatgtgttattgct--tttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
||| | | | | |||  ||   |||   |   | |  ||  ||||| ||    |  |||     | ||   |||  ||||     |  ||| |||||||| || |||||||| |||||||||||||| ||   || |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
gttagttagattttctctgcttcttttgtgtgttttagttgatgtt-gatcttttgtaatatagcattgcttgtatttgccaacatgcagGTCCTCTTGGACAAGGTATTGCAAATGCTGTTGGTTTAGCTCTTGCGGAGAAGCATTTGGCTGCTAGATTTAACAAACCTGACAATGAGATTGTTGACCA

upper sequence: Vv16s0022g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G60750.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------gttggctgctgttccttgaaacttaattcaatgtctgtatgttagaatgctaataaccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
                   ||||||  || | | ||  |  |    ||    || | | | |   |  | | ||  |  |  | ||  ||      | |  ||| |||||||| || || || || |||||||||||||| ||   ||  ||||||||||||||||| |||||||||||||||||   |||  | ||||||||
gtttgagattttgcttcttttggcttatggttcatgtgaaatttcacagaaactatctataactgtatttacaattgtgctctctgctttggctgctatgcagGTCCTCTTGGACAAGGAATCGCTAATGCTGTTGGTTTAGCTCTTGCTGAGAAGCATTTGGCTGCTAGATTCAACAAACCTGATGCTGAAGTAGTCGACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769694|gb|FQ468622.1|FQ468622
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352769391|gb|FQ471540.1|FQ471540
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352764787|gb|FQ471847.1|FQ471847
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352773566|gb|FQ472348.1|FQ472348
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352767978|gb|FQ466187.1|FQ466187
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|29785592|gb|CB342748.2|CB342748
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352780971|gb|FQ466284.1|FQ466284
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATG
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATG
EST: gi|71870025|gb|DT019080.1|DT019080
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|351019121|gb|FQ429281.1|FQ429281
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352772466|gb|FQ469991.1|FQ469991
EST:     TCCTGGTCACCTAGAGAAATTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352772348|gb|FQ469873.1|FQ469873
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352769567|gb|FQ468495.1|FQ468495
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352768973|gb|FQ468164.1|FQ468164
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|351023653|gb|FQ448204.1|FQ448204
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|349825245|gb|FQ417966.1|FQ417966
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|18459008|gb|BM437286.1|BM437286
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352763497|gb|FQ473200.1|FQ473200
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|351033600|gb|FQ447759.1|FQ447759
EST:     AGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: AGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352781922|gb|FQ469219.1|FQ469219
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352763883|gb|FQ465333.1|FQ465333
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352777337|gb|FQ473971.1|FQ473971
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352777545|gb|FQ466598.1|FQ466598
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352777697|gb|FQ466750.1|FQ466750
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGA
EST: gi|352781364|gb|FQ468208.1|FQ468208
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352781043|gb|FQ466356.1|FQ466356
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352769547|gb|FQ468475.1|FQ468475
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|349828858|gb|FQ419191.1|FQ419191
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352769423|gb|FQ471572.1|FQ471572
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352769676|gb|FQ468604.1|FQ468604
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352772796|gb|FQ473834.1|FQ473834
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352763443|gb|FQ473146.1|FQ473146
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352769211|gb|FQ471360.1|FQ471360
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|351017442|gb|FQ435795.1|FQ435795
EST:     AGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: AGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352782183|gb|FQ470085.1|FQ470085
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|71857175|gb|DT006230.1|DT006230
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352776590|gb|FQ474892.1|FQ474892
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|351028243|gb|FQ426144.1|FQ426144
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352782342|gb|FQ470245.1|FQ470245
EST:     CCTGGTCACCCAGAGAACTTCGAGAAACCTGGCGTTGAAGTGAGCA-CTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAG
genomic: CCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGA-CAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAG
EST: gi|352772693|gb|FQ472736.1|FQ472736
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|351015755|gb|FQ431710.1|FQ431710
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352780952|gb|FQ466265.1|FQ466265
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|33406481|gb|CF212108.1|CF212108
EST:     TGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352772382|gb|FQ469907.1|FQ469907
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352772998|gb|FQ470613.1|FQ470613
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352764396|gb|FQ472753.1|FQ472753
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352772559|gb|FQ472034.1|FQ472034
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGGCTGTTGGTTTGGCCGCTGTGGAG
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATG-CTGTTGGTTTGGCCGCTGTGGAG
EST: gi|352782181|gb|FQ470083.1|FQ470083
EST:     CCTGGTCACCCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGGATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: CCTGGTCACCC-AGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
EST: gi|352768869|gb|FQ468060.1|FQ468060
EST:     TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTG                         GCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA
genomic: TCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGgttggctgct ... gcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtctgtatgttagaatgctaataaccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA
                    taataac  putative branch site (score: 1)
                                           ttgctttt  putative PPT
                                        ttattgcttttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggctgctgttccttgaaacttaattcaatgtctgtatgttagaatgctaataaccggtccttatgtgttattgcttttatagGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA