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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGTTGTGTTTGTTCTAGAACATGGTGGTAAGGATCTTGAAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgctgggttttatatatgtctgaccagtttctgaagccctgatcttttatgtaactgcttttccattttgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00450.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA19G41380.1 (Glycine max), 5'ss of exon 9
TGCTATGTTGTGTTTGTTCTAGAACATGGTGGTAAGGATCTTGAAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgc-tgggttttatatatgtctgaccagtttctgaagccctgatcttt-tatgtaactgctttt----ccattttgcag------------
|| ||||| ||||| || | |||||||||||| |||||||||||||| ||||  ||  |||| ||||| || | | ||  |||| ||||||||||| |||      |||||   ||||  ||  ||  | ||||   | | | |||   |||  | |  ||||    | | |||                
TGTTATGTGGTGTTCGTACAAGAACATGGTGGCAAGGATCTTGAAAGTTTTGCACTCCTGAATTTTGACGAGGCAAGGGCTTTACTGGTTCAGgtatgttatacttgttttgattatggttg--cacctgctgagcgcttaagcttggcatggtattaatttttaggctaatttctgtcataaaatacag

upper sequence: Vv14s0060g00450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G09450.1 (Arabidopsis thaliana), 5'ss of exon 9
TGCTATGTTGTGTTTGTTCTAGAACATGGTGGTAAGGATCTTGAAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgctgggttttatatatgtctgaccagtttctgaagccctgatcttttatgtaactgcttttccattttgcag-------------------
|| |||||  |||||||||| ||||||||||| || || |||||||||||||| ||||||||||||||||||| | |||| ||| ||||||||||||||||  | || |    | | | ||  | ||| | |||    ||      |   ||  |  | ||||  ||    |                   
TGTTATGTCATGTTTGTTCTGGAACATGGTGGCAAAGACCTTGAAAGCTTTGTTCTTTTGAACTTTGATGAAGCAAGGAGCTTACTGGTTCAGgtaagttgtagagtatagattctatttg--ctgttacagaaattatgtaaaaatg-atattttttcttccggttaatggcatgtgtttcacatctaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014738|gb|FQ437938.1|FQ437938
EST:     AAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAG                         GTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
genomic: AAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgct ... cattttgcagGTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
EST: gi|122688897|gb|EC927503.1|EC927503
EST:     GATGAAGTACGGAGTTTATTGGTTCAG                         GTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
genomic: GATGAAGTACGGAGTTTATTGGTTCAGgtaagttgct ... cattttgcagGTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
EST: gi|349830931|gb|FQ418215.1|FQ418215
EST:     AAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAG                         GTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
genomic: AAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgct ... cattttgcagGTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
EST: gi|351041418|gb|FQ447545.1|FQ447545
EST:     AAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAG                         GTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT
genomic: AAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgct ... cattttgcagGTTACAGTTGCCTTGGCTGTGGCAGAAGCTGCATATGAATTTGAACATCGT