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gtgaaatctacactcttatcactatcttttggcacatctgaggtcaaatctattgctgattcagcaaactaaactagcattatttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGGGTCCAAAAGGAGACAAACAG
species | Vitis vinifera |
transcript | Vv14s0060g00450.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGGEST: gi|122688897|gb|EC927503.1|EC927503
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
EST: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGGEST: gi|349830931|gb|FQ418215.1|FQ418215
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
EST: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGGEST: gi|351041418|gb|FQ447545.1|FQ447545
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
EST: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
tgaggtcaaatctattgctgattcagcaaactaaactagcattatttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGGGTCCAAAAGGAGACAAACAG
aactaaa putative branch site (score: 2)
attatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatctacactcttatcactatcttttggcacatctgaggtcaaatctattgctgattcagcaaactaaactagcattatttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGGGTCCAAAAGGAGACAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA