1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aactgctttacattttggaaattttgatatttcagtctctttctttctagctgataggtgaacacatcattttattttcaactaattaattttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATGGACAACTATGGCTCAGCAAAAGAAGCAACCTCTGATCCTTTCTTCACTG
species | Vitis vinifera |
transcript | Vv14s0060g00450.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTT AAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATGEST: gi|122688897|gb|EC927503.1|EC927503
genomic: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTTgtaagtattt ... tttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATG
EST: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTT AAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATGEST: gi|349830931|gb|FQ418215.1|FQ418215
genomic: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTTgtaagtattt ... tttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATG
EST: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTT AAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATGEST: gi|351041418|gb|FQ447545.1|FQ447545
genomic: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTTgtaagtattt ... tttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATG
EST: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTT AAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATG
genomic: TGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTATTGAAGAAATCTTTTgtaagtattt ... tttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATG
tctagctgataggtgaacacatcattttattttcaactaattaattttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATGGACAACTATGGCTCAGCAAAAGAAGCAACCTCTGATCCTTTCTTCACTG
ttttgtt CT-rich tract
atcattttattttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgctttacattttggaaattttgatatttcagtctctttctttctagctgataggtgaacacatcattttattttcaactaattaattttgttgcagAAACGAACTTCAAAGGATGAGAGAGAGTTACGTTCACTGAAGAAGCGTATGGACAACTATGGCTCAGCAAAAGAAGCAACCTCTGATCCTTTCTTCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- ctgcttt
- - - - - - - - - - - - - - - - cagtctc
- - - - - - - - - - - - - - - - - - - - - - - ctagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaat