1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCAAATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAGgtataacagttgatctctccatatctttgttataaaatgcatatcaggaaaagatttgtggcatgtttggtatctattgggatttccaaatttggctagg...
species | Vitis vinifera |
transcript | Vv14s0060g00450.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AATACATACAGGAAGACGAAGGAGATAACTGAAGATTTCTGGGAGGGAAG TTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTEST: gi|122688897|gb|EC927503.1|EC927503
genomic: AATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAGgtataacagt ... aattatacagTTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCT
EST: AATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAG TTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTEST: gi|349830931|gb|FQ418215.1|FQ418215
genomic: AATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAGgtataacagt ... aattatacagTTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCT
EST: AATACATACAGGAAGACGAAGGAGATAACTGAAGATTTCTGGGAGGGAAG TTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCTEST: gi|351041418|gb|FQ447545.1|FQ447545
genomic: AATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAGgtataacagt ... aattatacagTTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCT
EST: AATACATACAGGAAGACGAAGGAGATAACTGAAGATTTCTGGGAGGGAAG TTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCT
genomic: AATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAGgtataacagt ... aattatacagTTTCCCCAAAACAAACGTGCTGTGGTTGCAGTACTTGGTGGACATTTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAATACATACAGGAAGATGAAGGAGATAACTGAAGATTTCTGGGAGGGAAGgtataacagttgatctctccatatctttgttataaaatgcatatcaggaaaagatttgtggcatgtttggtatctattgggatttccaaatttggctagg
- - - - - - GGAAGA
- - - - - - - AAGATG
- - - - - - - - - - AAGGAG
- - - - - - - - - - - AGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaga