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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGTTGCAGTTCACTCTTGAGGGAAAGAATATGTTTGTCAAAACATTTGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatctacactcttatcactatcttttggcacatctgaggtcaaatctattgctgattcagcaaactaaactagcattatttatgcacag

Basic information

species Vitis vinifera
transcript Vv14s0060g00450.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00450.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G09450.1 (Arabidopsis thaliana), 5'ss of exon 11
GAAATGTTGCAGTTCACTCTTGAGGGAAAGAATATGTTTGTCAAAACATTTGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatctacactcttatcactatcttttggcaca---tctgaggtcaaatctattgctgattcagc-aaacta--aactagcattatt----tatgcacag
|| |   |||  || | ||||||||||||  |  | |   ||||||| || ||| |    ||||||||||| || ||||||||||| ||||||||||| ||||   |    | ||| |  |||      |     |     | ||||| ||||||   || |  |||  ||||||  ||  | |||  |     | ||| |||
GATACTCTGCCTTTTATTCTTGAGGGAAAACAAGTTTGCATCAAAACTTTCGGAGTACAGATATCCATAATCGACTTTACTCTTTCAAGAATCAATACAGgtgggtttctgattctcaatactgcgacataatgtaaaccataaggtccaatctaacacttaaacagttaaactaccaataatcatggtgctaatgtgctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014738|gb|FQ437938.1|FQ437938
EST:     TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG                         GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
EST: gi|122688897|gb|EC927503.1|EC927503
EST:     TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG                         GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
EST: gi|349830931|gb|FQ418215.1|FQ418215
EST:     TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG                         GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
EST: gi|351041418|gb|FQ447545.1|FQ447545
EST:     TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTG                         GCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG
genomic: TGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatcta ... ttatgcacagGCGAAGCTATACTTTTTCTAGACCTATCTTCAGACCCAGAACTCTTTAAGG