Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattatgttatttaagctttcttccatgaaaatgaaaatactgttggaaatgctcatttgctttgattagcattatatgaaatatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT

Basic information

species Vitis vinifera
transcript Vv13s0019g03280.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G03490.1 (Glycine max), 3'ss of exon 6
aattatgttatttaagctttcttccatgaaaatgaaaatactgttggaaat--gctcatttgctttgattagcattatatgaa-atatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT
 |||||  ||  |   || | || ||   ||    |||||   ||  |  |  | |   ||| |   ||  | |  ||||| | || | |||      |  ||||||| |||||  | ||||| ||||||||||||||||||||||| || |||||||| || || ||| | ||||| |||||||||||||||||||||||| 
-attattataagtcttctgtgttgcagttaacctgaaatagaatttcatcttggttttcttgttactatatgtaa-atatgtatatctgttctttgagtgtaGGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGATGTCCCATAACGCCATCGAATTATGCAGCCCTTGAGGGCATT-

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G34830.1 (Glycine max), 3'ss of exon 6
----aattatgttatttaagctttcttccatgaaaatgaaaatactgttggaaatgctcatttgctttgat-tagcattatatgaaatatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT
    || | || | ||    ||    |  |    ||| | |||    |      |      || ||  ||  |   | ||| | | |||| |||      |  ||||||| |||||  | ||||| ||||||||||||||||||||||| || |||||||| || || ||| | || || ||||| |||||||||||||||||||
ttataaatctgctgtt----ctgcagttaacctgaattagaatttcatcttggttttcttgttactacgacatgtgaatatgt-atatatcttctttgagtgtagGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGATGTCCCATAACGCCGTCGAATTACGCAGCCCTTGAGGGCATTT

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G42100.1 (Glycine max), 3'ss of exon 5
aattatgttatttaagctttcttccatgaaaatgaaaatactgttggaaatgctcatttgctttgattagcattatatgaaatatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT------------------
||||  |||||||      | |    || | |   |   |   || |||    | | ||  | || ||  |||  | | || | |||   | ||||| ||             | ||||| ||||||||||| |||||||| || || ||||| ||||| || ||| | ||| | |||||||||||||| |||||| |||                  
aattg-gttatttgtaacatgtc---tgcacagttagccagaattagaagatttaaatt-ttctgcttgtcat-gtgt-aagtttatctcacattttgagt-----------ggtcagGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCGGCTGTCCCATAACTCCACCCAATTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATT

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G06800.2 (Glycine max), 3'ss of exon 5
------aattatgttatttaagctttcttccatgaaaatgaaa-atactgttggaaatgctcatttgctttgattagcattatatgaaatatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT
      | | || || ||  |  |||   |  | |   ||||  | |   ||  || |      |||   ||  ||   |||| |     || ||   | | |  ||||||| |||||  | ||||| ||||||||||| |||||||| || || |||||  |||| || ||| | ||||| || ||||||||||| |||||| |||
ctaattagtcat-ttgttgcatgtttgcacagttagcctgaattagaagatttaaattttctgcttgtcatgtataagtttatct----catgttttgagtgt--agGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCAGCTGTCCCATAACTCCATCCAACTATGCAGCCCTGGAGGGCGTTT

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G55770.7 (Arabidopsis thaliana), 3'ss of exon 7
aattatgttatttaagctttcttccatgaaaatgaaaatactgttggaaatgctcatttgct--ttgattagcattatatgaaatat---attc-aaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT
  |||      | |||    |||     || |||||||  || |  |  ||  | |   |||  ||| | |  | |||  |   | |   ||||  |||| | |||||||| || ||||||||| | |||||||| || || ||||||||||| ||||| || |||||||| || || || || || ||||| ||||| || ||  
-gttaaacctataaaggagactt-----aatatgaaaactctttatgggatttttaaaagctatttggtcacaaatatccgtctttttcgattctgaaatatgcagGTAACAGTCGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGTTGCCCAATTTCACCTTCCAACTACGCAGCTCTTGAAGGAATCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830068|gb|FQ420328.1|FQ420328
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110369112|gb|EC933258.1|EC933258
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|27584700|gb|CB007395.1|CB007395
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351017401|gb|FQ435754.1|FQ435754
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110694176|gb|EE071051.1|EE071051
EST:     CACAAGAGAAACGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|71874016|gb|DT023071.1|DT023071
EST:     CACAAGAGAAATGTGCAACTTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTA-CCGTGGAGAGCC
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCC
EST: gi|110694010|gb|EE070744.1|EE070744
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110690574|gb|EE067792.1|EE067792
EST:     CACAAGAGAAATGTGCAACTTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110700592|gb|EE077382.1|EE077382
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTTCA-GTGCTCCCA
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTT-CAAGTGCTCCCA
EST: gi|110356701|gb|EC919722.1|EC919722
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110723919|gb|EE099295.1|EE099295
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|349815783|gb|FQ400939.1|FQ400939
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110706918|gb|EE082862.1|EE082862
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAA                         GTAACCGTGGAGAGCCCAG-CTTATCACAAATCATGTTTTCAGGTGCTCCC
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCC-AGGCTTATCACAAATCATGTTT-CAAGTGCTCCC
EST: gi|349832654|gb|FQ422012.1|FQ422012
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351025328|gb|FQ434341.1|FQ434341
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110364007|gb|EC927644.1|EC927644
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|30298141|gb|CB974935.1|CB974935
EST:     CACAAGAGAAATGTGCAACTTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110698907|gb|EE076941.1|EE076941
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351051985|gb|FQ450676.1|FQ450676
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|349820799|gb|FQ404173.1|FQ404173
EST:     CACAAGAGAAATGTGCAACCTGCGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110721423|gb|EE098405.1|EE098405
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAAAAA                         GTAACCGTGGATAGCCAGGCTTAAT-ACAAATCATGTTTCAAGTGCTTCCA
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTA-TCACAAATCATGTTTCAAGTGCTCCCA
EST: gi|351033596|gb|FQ447755.1|FQ447755
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351031826|gb|FQ460083.1|FQ460083
EST:     CACAAGAGAAATGTGTAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110724498|gb|EE100378.1|EE100378
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351047159|gb|FQ454769.1|FQ454769
EST:     CACAAGAGAAATGTGTAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110732116|gb|EE107131.1|EE107131
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|27581818|gb|CB004513.1|CB004513
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351031668|gb|FQ459925.1|FQ459925
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|77582740|gb|DV220358.1|DV220358
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATC
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATC
EST: gi|352798866|gb|FQ478501.1|FQ478501
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCTCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110359442|gb|EC920929.1|EC920929
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|77577455|gb|DV217464.1|DV217464
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110690206|gb|EE067102.1|EE067102
EST:     CACAAGAGAAATGTGCAACTTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|349830211|gb|FQ420471.1|FQ420471
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|349823305|gb|FQ402504.1|FQ402504
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|349815117|gb|FQ410340.1|FQ410340
EST:     CACAAGAGAAATGTGTAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|351029880|gb|FQ427720.1|FQ427720
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|110732938|gb|EE108660.1|EE108660
EST:     CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAA                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|71867356|gb|DT016411.1|DT016411
EST:     CACAAGAGAAATGTGCAACTTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCA-GTGCTCCCAT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCAT
EST: gi|71876227|gb|DT025282.1|DT025282
EST:     CACAAGAGAAATGTGCAACTTGTGGTAAAACAGCTTATCCACTTGAGAAG                         GTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTT
genomic: CACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAGgtggggttct ... aaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaatgctcatttgctttgattagcattatatgaaatatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT
               ctttgat  putative branch site (score: 5)
                                                ttttc  putative PPT
                tttgattagcattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattatgttatttaagctttcttccatgaaaatgaaaatactgttggaaatgctcatttgctttgattagcattatatgaaatatattcaaaattttcagGTAACCGTGGAGAGCCAGGCTTATCACAAATCATGTTTCAAGTGCTCCCATGGTGGCTGCCCAATATCCCCATCAAATTATGCAGCCCTTGAGGGCATTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatata