Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATTCTCCAAATCGCCTCTGAATCTTTAATTTCTGGCTGTTGATTAATACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggcttttggtctaacgagattgattctgtcaccgctttcttcagctagatctcgattcgactctgtttttttgctcatgttgttgtgattgttt...

Basic information

species Vitis vinifera
transcript Vv13s0019g03280.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876859|gb|DT025914.1|DT025914
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349830068|gb|FQ420328.1|FQ420328
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGGGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110369112|gb|EC933258.1|EC933258
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351017401|gb|FQ435754.1|FQ435754
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110694176|gb|EE071051.1|EE071051
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|71874016|gb|DT023071.1|DT023071
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110694010|gb|EE070744.1|EE070744
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110690574|gb|EE067792.1|EE067792
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110700592|gb|EE077382.1|EE077382
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110356701|gb|EC919722.1|EC919722
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110723919|gb|EE099295.1|EE099295
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|30124725|gb|CB910064.1|CB910064
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349815783|gb|FQ400939.1|FQ400939
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|37188111|gb|CF607462.1|CF607462
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110706918|gb|EE082862.1|EE082862
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349832654|gb|FQ422012.1|FQ422012
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351025328|gb|FQ434341.1|FQ434341
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|30298141|gb|CB974935.1|CB974935
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110698907|gb|EE076941.1|EE076941
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351051985|gb|FQ450676.1|FQ450676
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349820799|gb|FQ404173.1|FQ404173
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110721423|gb|EE098405.1|EE098405
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351033596|gb|FQ447755.1|FQ447755
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCGAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|71871301|gb|DT020356.1|DT020356
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351031826|gb|FQ460083.1|FQ460083
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|71871524|gb|DT020579.1|DT020579
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|30251145|gb|CB968878.1|CB968878
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110724498|gb|EE100378.1|EE100378
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351047159|gb|FQ454769.1|FQ454769
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110732116|gb|EE107131.1|EE107131
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351031668|gb|FQ459925.1|FQ459925
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|77581596|gb|DV219746.1|DV219746
EST:     GACCTTCATTTCTCAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|77582740|gb|DV220358.1|DV220358
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|352798866|gb|FQ478501.1|FQ478501
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAACTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110359442|gb|EC920929.1|EC920929
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|77577455|gb|DV217464.1|DV217464
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110690206|gb|EE067102.1|EE067102
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349830211|gb|FQ420471.1|FQ420471
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349823305|gb|FQ402504.1|FQ402504
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|71875655|gb|DT024710.1|DT024710
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|349815117|gb|FQ410340.1|FQ410340
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|351029880|gb|FQ427720.1|FQ427720
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|110732938|gb|EE108660.1|EE108660
EST:     TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|71867356|gb|DT016411.1|DT016411
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
EST: gi|71876227|gb|DT025282.1|DT025282
EST:     GACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAG                         TTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC
genomic: TACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggct ... gtgcttgaagTTTTCTGAGCAGCTGAGGGAAAGGCAAATCTAAGCATATATTTCCGAAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGATTCTCCAAATCGCCTCTGAATCTTTAATTTCTGGCTGTTGATTAATACCTTCATTTCTGAAGACCTCACGGATCAACGATTTCTGGCTTGTTTAGgtaggcggcttttggtctaacgagattgattctgtcaccgctttcttcagctagatctcgattcgactctgtttttttgctcatgttgttgtgattgttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA