1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcag
species | Vitis vinifera |
transcript | Vv13s0019g03280.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|349830068|gb|FQ420328.1|FQ420328
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110369112|gb|EC933258.1|EC933258
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|27584700|gb|CB007395.1|CB007395
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351017401|gb|FQ435754.1|FQ435754
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110694176|gb|EE071051.1|EE071051
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|71874016|gb|DT023071.1|DT023071
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110694010|gb|EE070744.1|EE070744
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110690574|gb|EE067792.1|EE067792
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110700592|gb|EE077382.1|EE077382
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110356701|gb|EC919722.1|EC919722
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110723919|gb|EE099295.1|EE099295
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|30124725|gb|CB910064.1|CB910064
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|349815783|gb|FQ400939.1|FQ400939
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110706918|gb|EE082862.1|EE082862
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|349832654|gb|FQ422012.1|FQ422012
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351025328|gb|FQ434341.1|FQ434341
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110364007|gb|EC927644.1|EC927644
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGAGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|30298141|gb|CB974935.1|CB974935
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110698907|gb|EE076941.1|EE076941
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351051985|gb|FQ450676.1|FQ450676
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCANAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|349820799|gb|FQ404173.1|FQ404173
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110721423|gb|EE098405.1|EE098405
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351033596|gb|FQ447755.1|FQ447755
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|71871301|gb|DT020356.1|DT020356
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351031826|gb|FQ460083.1|FQ460083
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110724498|gb|EE100378.1|EE100378
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351047159|gb|FQ454769.1|FQ454769
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110732116|gb|EE107131.1|EE107131
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|27581818|gb|CB004513.1|CB004513
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351031668|gb|FQ459925.1|FQ459925
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|77582740|gb|DV220358.1|DV220358
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|352798866|gb|FQ478501.1|FQ478501
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110359442|gb|EC920929.1|EC920929
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|77577455|gb|DV217464.1|DV217464
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110690206|gb|EE067102.1|EE067102
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|349830211|gb|FQ420471.1|FQ420471
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|349823305|gb|FQ402504.1|FQ402504
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|71875655|gb|DT024710.1|DT024710
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAAGCTGCCAGCATGTTTTCTGEST: gi|349815117|gb|FQ410340.1|FQ410340
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAA-GCTGCCAGCATGTTTTCTG
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|351029880|gb|FQ427720.1|FQ427720
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACT---GAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|110732938|gb|EE108660.1|EE108660
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|71867356|gb|DT016411.1|DT016411
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAAEST: gi|37183508|gb|CF602862.1|CF602862
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCANAGCTGCCAGCEST: gi|71876227|gb|DT025282.1|DT025282
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGC
EST: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcag
- - - - TCAGCT
- - - - CAGCTG
- - - - - AGCTGA
- - - - - - - AGAAGT
- - - - - - - - - - - - - - AGAGCT