Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG

Basic information

species Vitis vinifera
transcript Vv13s0019g03280.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g15940.1 (Oryza sativa), 3'ss of exon 3
gtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagt--accttgtgtggc-------tttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
        |  |||| |     || |             ||  |  |||  | | |   | | | ||    ||    |||| | ||| | || |||    |  |||| ||         ||||||||||| ||||| |||||||| ||  |||||||||| |||||||| ||||| ||||| || ||  |||||||||| ||||| || ||||||
-------gtgagtgccattggctgcatgcattgcttgtctgttttcattccaaagtacttctatgtttctatg--tgatgctacctc-gcttttcaactaattttgtctgaaacattcatttcagACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAG

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G128206_T01 (Zea mays), 3'ss of exon 3
gtaaatctttcgtgcaaccatttgtacattagctccaa-gtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
                            | || ||||   || |    ||     ||  ||  | ||| | ||    ||||             |  || |    | ||   | ||||| || ||||| ||||||||||| || |||||||| || |||||||| || ||||| || ||||||||||| || ||||| |||||||||
---------------------------gtgagttccagcatgtacgcgttcgtttttttgt-ctgattgtattttgaaatgaagaagtgacaagtttgtccaaaatctgctatccagACCAGATCACCAAGCAAAGCTGCAAGGATGTTTTCAGGAACACAAGACAAGTGTGCGACTTGTGGTAAAACTGCGTATCCTCTTGAGAAG

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G03490.1 (Glycine max), 3'ss of exon 5
-gtaaa-tctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
 ||||| |  ||  |    | || |  | | |   |     |   ||  | ||       | |||    || ||  | |||          | | |  | | ||| |||   || ||||||||||| || || |||||||| |||||||||||||| |||||||| || ||||| || ||||| ||||| ||||||||| | ||||| 
ggtaaaatgcttaattttgcaatcttcaaacttcattgtgataagtaggtctaca-----gcattcg--atcttattgaata---------actattggcatcttttgtttattccaGACAAGGTCTCCTAGTAAAGCTGCGAGCATGTTTTCTGGCACACAAGAAAAGTGTGCCACATGTGGCAAAACTGCTTATCCATTAGAGAA-

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G06800.1 (Glycine max), 3'ss of exon 3
--gtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
    |||||||   |    |  |||| |  || | |   | ||   || ||||  | |||||  |||| |  || |    | |    |   | | |  | | ||| ||    ||  |||||||||| || || |||||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||| ||||||||  | ||||||
gtaaaaatcttgaatttggctttttgaaactttgttgggaatgagcaa-tttagaaatgggt-cttatgacatttggtgtttctgcttac-actgttggcatcttttggttattctagACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAG

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G34830.1 (Glycine max), 3'ss of exon 5
gtaaa-tctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
||||| |  ||  |    | | ||  | | |   |     |   ||  | |||      | |||     | ||  | |||          | | |  | | ||| |||   || ||||||||||| || || |||||||| |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||||||| | ||||||
gtaaaatgcttaattttgcaaatttcaaacttcattgtgataagtaggtctaaa-----gcattcg--gtcttattgaata---------actattggcatcttttgtttattccagACAAGGTCTCCTAGTAAAGCTGCGAGCATGTTTTCTGGCACCCAAGAAAAGTGTGCCACATGTGGCAAAACTGCTTATCCATTGGAGAAG

upper sequence: Vv13s0019g03280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G42100.1 (Glycine max), 3'ss of exon 3
--gtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
    |||||||   |    |  |||| |   | | |   | ||   || ||||  | |||||   ||| |  || |    |  |  ||   | | || | | ||| ||    ||  |||||||||| || || |||||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||| ||||||||  | ||||||
gtaaaaatcttgaatttgtctttttgaaacattgttgggaatgagcaa-tttagaaatgggt--ctatgacatttggagttttctgctgacactgtcggcatcttttgattattctagACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGAC-CAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876859|gb|DT025914.1|DT025914
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|349830068|gb|FQ420328.1|FQ420328
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110369112|gb|EC933258.1|EC933258
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|27584700|gb|CB007395.1|CB007395
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351017401|gb|FQ435754.1|FQ435754
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110694176|gb|EE071051.1|EE071051
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|71874016|gb|DT023071.1|DT023071
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110694010|gb|EE070744.1|EE070744
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110690574|gb|EE067792.1|EE067792
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110700592|gb|EE077382.1|EE077382
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110356701|gb|EC919722.1|EC919722
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110723919|gb|EE099295.1|EE099295
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|30124725|gb|CB910064.1|CB910064
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|349815783|gb|FQ400939.1|FQ400939
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110706918|gb|EE082862.1|EE082862
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|349832654|gb|FQ422012.1|FQ422012
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351025328|gb|FQ434341.1|FQ434341
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110364007|gb|EC927644.1|EC927644
EST:     CTGAGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|30298141|gb|CB974935.1|CB974935
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110698907|gb|EE076941.1|EE076941
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351051985|gb|FQ450676.1|FQ450676
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCANAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|349820799|gb|FQ404173.1|FQ404173
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110721423|gb|EE098405.1|EE098405
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351033596|gb|FQ447755.1|FQ447755
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|71871301|gb|DT020356.1|DT020356
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351031826|gb|FQ460083.1|FQ460083
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110724498|gb|EE100378.1|EE100378
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351047159|gb|FQ454769.1|FQ454769
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110732116|gb|EE107131.1|EE107131
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|27581818|gb|CB004513.1|CB004513
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351031668|gb|FQ459925.1|FQ459925
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|77582740|gb|DV220358.1|DV220358
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|352798866|gb|FQ478501.1|FQ478501
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110359442|gb|EC920929.1|EC920929
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|77577455|gb|DV217464.1|DV217464
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110690206|gb|EE067102.1|EE067102
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|349830211|gb|FQ420471.1|FQ420471
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|349823305|gb|FQ402504.1|FQ402504
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|71875655|gb|DT024710.1|DT024710
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAAGCTGCCAGCATGTTTTCTG
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAA-GCTGCCAGCATGTTTTCTG
EST: gi|349815117|gb|FQ410340.1|FQ410340
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|351029880|gb|FQ427720.1|FQ427720
EST:     CTGCGAAGTCAGCTGAGAAGTTAACT---GAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|110732938|gb|EE108660.1|EE108660
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|71867356|gb|DT016411.1|DT016411
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
EST: gi|37183508|gb|CF602862.1|CF602862
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCANAGCTGCCAGC
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGC
EST: gi|71876227|gb|DT025282.1|DT025282
EST:     CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG                         ACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA
genomic: CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGgtaaatcttt ... tggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG
                       ctctgat  putative branch site (score: 4)
                                                ctttc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatctttcgtgcaaccatttgtacattagctccaagtggataaatttaagattgggtatttattatgttggtcaatgccatctctgattctcagtaccttgtgtggctttcagACAAGGTCACCCAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCAACCTGTGGTAAAACAGCTTATCCACTTGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA