Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttcttgtttcaccagataagattctttgtttgatttctcaatggtttctattccattgtttaatgtgcaatatatttcattttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG

Basic information

species Vitis vinifera
transcript Vv13s0019g03280.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876859|gb|DT025914.1|DT025914
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349830068|gb|FQ420328.1|FQ420328
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110369112|gb|EC933258.1|EC933258
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|27584700|gb|CB007395.1|CB007395
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351017401|gb|FQ435754.1|FQ435754
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110694176|gb|EE071051.1|EE071051
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|71874016|gb|DT023071.1|DT023071
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110694010|gb|EE070744.1|EE070744
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110690574|gb|EE067792.1|EE067792
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110700592|gb|EE077382.1|EE077382
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110356701|gb|EC919722.1|EC919722
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110723919|gb|EE099295.1|EE099295
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|30124725|gb|CB910064.1|CB910064
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349815783|gb|FQ400939.1|FQ400939
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110706918|gb|EE082862.1|EE082862
EST:     TGAGCAGCTCTTTAAGGAATCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349832654|gb|FQ422012.1|FQ422012
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351025328|gb|FQ434341.1|FQ434341
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110364007|gb|EC927644.1|EC927644
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGAGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|30298141|gb|CB974935.1|CB974935
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110698907|gb|EE076941.1|EE076941
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351051985|gb|FQ450676.1|FQ450676
EST:     TGAGCGGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349820799|gb|FQ404173.1|FQ404173
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCGC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110721423|gb|EE098405.1|EE098405
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351033596|gb|FQ447755.1|FQ447755
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|71871301|gb|DT020356.1|DT020356
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351031826|gb|FQ460083.1|FQ460083
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110724498|gb|EE100378.1|EE100378
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351047159|gb|FQ454769.1|FQ454769
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110732116|gb|EE107131.1|EE107131
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|27581818|gb|CB004513.1|CB004513
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351031668|gb|FQ459925.1|FQ459925
EST:     TGAGCGGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|77582740|gb|DV220358.1|DV220358
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|352798866|gb|FQ478501.1|FQ478501
EST:     TGAGCGGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110359442|gb|EC920929.1|EC920929
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|77577455|gb|DV217464.1|DV217464
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110690206|gb|EE067102.1|EE067102
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349830211|gb|FQ420471.1|FQ420471
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349823305|gb|FQ402504.1|FQ402504
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|71875655|gb|DT024710.1|DT024710
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|349815117|gb|FQ410340.1|FQ410340
EST:     TGAGCAGCCCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCTGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|351029880|gb|FQ427720.1|FQ427720
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACT---GAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|110732938|gb|EE108660.1|EE108660
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|71867356|gb|DT016411.1|DT016411
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|37183508|gb|CF602862.1|CF602862
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
EST: gi|71876227|gb|DT025282.1|DT025282
EST:     TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCAC                         CTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
genomic: TGAGCAGCTCTTTAAGGAGTCTGGAAATTTCAACAAGAATTTTCAGTCACgtgagtcttc ... ttttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcaatggtttctattccattgtttaatgtgcaatatatttcattttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG
                       gtttaat  putative branch site (score: 4)
                                        tttcattttc  putative PPT
                                  aatatatttcattttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcttcttgtttcaccagataagattctttgtttgatttctcaatggtttctattccattgtttaatgtgcaatatatttcattttcaacagCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT