Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAAAAGAGTCAGTTCTACAAGCCTCACCATGACTACTTCTCTGATTCTgtaagttatttacccctgccttttttagtgacctttccttcaatcttttagccttgtgaactagtaatgagtgcaaagattttcaattgcag

Basic information

species Vitis vinifera
transcript Vv05s0062g01220.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110427318|gb|EC993753.1|EC993753
EST:     ATAAAAAGAGTCAGTTCTACAAGCCTCACCATGACTACTTCTCTGATTCT                         TTTAACTTGAAGCGTGGTGGTCAACGAGTAGCAACAATGCTCATTTATTTA
genomic: ATAAAAAGAGTCAGTTCTACAAGCCTCACCATGACTACTTCTCTGATTCTgtaagttatt ... tcaattgcagTTTAACTTGAAGCGTGGTGGTCAACGAGTAGCAACAATGCTCATTTATTTA
EST: gi|349820405|gb|FQ406961.1|FQ406961
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349815347|gb|FQ400502.1|FQ400502
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351036556|gb|FQ457269.1|FQ457269
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351046420|gb|FQ453036.1|FQ453036
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349811155|gb|FQ406107.1|FQ406107
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|34319741|gb|CF372495.1|CF372495
EST:     ATAAAAAGAGTCAGTTCTACAAGCCTCCCCATGACTACTTCTCTGATTCT                         TTTACCTTGAAGCGTGGTGGTCACCGAGTAGCAACAATGCTCATTTATTTA
genomic: ATAAAAAGAGTCAGTTCTACAAGCCTCACCATGACTACTTCTCTGATTCTgtaagttatt ... tcaattgcagTTTAACTTGAAGCGTGGTGGTCAACGAGTAGCAACAATGCTCATTTATTTA
EST: gi|351056456|gb|FQ454317.1|FQ454317
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349821182|gb|FQ408769.1|FQ408769
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349807356|gb|FQ401348.1|FQ401348
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351044260|gb|FQ447614.1|FQ447614
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349817923|gb|FQ407912.1|FQ407912
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351033401|gb|FQ462052.1|FQ462052
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349808011|gb|FQ402402.1|FQ402402
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351042433|gb|FQ442900.1|FQ442900
EST:     CACTCGGCCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351037271|gb|FQ457104.1|FQ457104
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|349824801|gb|FQ414659.1|FQ414659
EST:     CACTCGGTCTCCGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351032228|gb|FQ460485.1|FQ460485
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351049572|gb|FQ429194.1|FQ429194
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351052197|gb|FQ450767.1|FQ450767
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
EST: gi|351055664|gb|FQ452129.1|FQ452129
EST:     CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA
genomic: CACTCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAA