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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctgtcttcccccttttcattcttctcttattaccatccgatcccctaagtttccttccaatattttgcgattcctctgctcagatcactttct...

Basic information

species Vitis vinifera
transcript Vv05s0062g01220.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820405|gb|FQ406961.1|FQ406961
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349815347|gb|FQ400502.1|FQ400502
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351036556|gb|FQ457269.1|FQ457269
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCGACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351046420|gb|FQ453036.1|FQ453036
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349811155|gb|FQ406107.1|FQ406107
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTACTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351017429|gb|FQ435782.1|FQ435782
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351056456|gb|FQ454317.1|FQ454317
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349821182|gb|FQ408769.1|FQ408769
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349807356|gb|FQ401348.1|FQ401348
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351044260|gb|FQ447614.1|FQ447614
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349817923|gb|FQ407912.1|FQ407912
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351033401|gb|FQ462052.1|FQ462052
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349808011|gb|FQ402402.1|FQ402402
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTACTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351042433|gb|FQ442900.1|FQ442900
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349811066|gb|FQ406054.1|FQ406054
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351037271|gb|FQ457104.1|FQ457104
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|349824801|gb|FQ414659.1|FQ414659
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351032228|gb|FQ460485.1|FQ460485
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351049572|gb|FQ429194.1|FQ429194
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351052197|gb|FQ450767.1|FQ450767
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: gi|351055664|gb|FQ452129.1|FQ452129
EST:     GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG                         GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGGTCTCTGATTCTGTCAGTCTCTTCGTTTTCTCCATGGCGGCTCCAATGAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctgtcttcccccttttcattcttctcttattaccatccgatcccctaagtttccttccaatattttgcgattcctctgctcagatcactttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttcc