1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acattgtgattgaacgtgatctgagttgttaacagaccatcatcatcaaagtcatgctaaagagtattagtattgaggtttttatgtttgggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
species | Vitis vinifera |
transcript | Vv05s0062g01220.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349815347|gb|FQ400502.1|FQ400502
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351036556|gb|FQ457269.1|FQ457269
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCGACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351046420|gb|FQ453036.1|FQ453036
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349811155|gb|FQ406107.1|FQ406107
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTACTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351017429|gb|FQ435782.1|FQ435782
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351056456|gb|FQ454317.1|FQ454317
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349821182|gb|FQ408769.1|FQ408769
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349807356|gb|FQ401348.1|FQ401348
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351044260|gb|FQ447614.1|FQ447614
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349817923|gb|FQ407912.1|FQ407912
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351033401|gb|FQ462052.1|FQ462052
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349808011|gb|FQ402402.1|FQ402402
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTACTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351042433|gb|FQ442900.1|FQ442900
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349811066|gb|FQ406054.1|FQ406054
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351037271|gb|FQ457104.1|FQ457104
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|349824801|gb|FQ414659.1|FQ414659
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351032228|gb|FQ460485.1|FQ460485
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351049572|gb|FQ429194.1|FQ429194
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351052197|gb|FQ450767.1|FQ450767
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATGEST: gi|351055664|gb|FQ452129.1|FQ452129
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
EST: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCG GTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
genomic: GAAATTCGTAATTGGTCTCCTTGCTTTAGTCTCTTTCGGAATGATCTTCGgtaatctctg ... ggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
tcaaagtcatgctaaagagtattagtattgaggtttttatgtttgggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
tgctaaa putative branch site (score: 2)
tttttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattgtgattgaacgtgatctgagttgttaacagaccatcatcatcaaagtcatgctaaagagtattagtattgaggtttttatgtttgggctctgcagGTGCTTTGTTGCAACTAGAATTCATCGGAGGATTAGAAGAAGTAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - -taacaga
- - - - - - - - - - - - - - - - - - -catcatc
- - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagagt