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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGGCATTTCCATCATTTAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatggttactattaatgtctgtttgtaataaataaaagctacaatattagtttctatagttgagctattctataaagaatattcattgtttgata...

Basic information

species Vitis vinifera
transcript Vv05s0062g01220.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820405|gb|FQ406961.1|FQ406961
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349815347|gb|FQ400502.1|FQ400502
EST:     TAGAAAAGTACATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351036556|gb|FQ457269.1|FQ457269
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351046420|gb|FQ453036.1|FQ453036
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349811155|gb|FQ406107.1|FQ406107
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCCACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351017429|gb|FQ435782.1|FQ435782
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351056456|gb|FQ454317.1|FQ454317
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349821182|gb|FQ408769.1|FQ408769
EST:     TAGAAAAGTACATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349807356|gb|FQ401348.1|FQ401348
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351044260|gb|FQ447614.1|FQ447614
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349817923|gb|FQ407912.1|FQ407912
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351033401|gb|FQ462052.1|FQ462052
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349808011|gb|FQ402402.1|FQ402402
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351042433|gb|FQ442900.1|FQ442900
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349811066|gb|FQ406054.1|FQ406054
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351037271|gb|FQ457104.1|FQ457104
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCGGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|349824801|gb|FQ414659.1|FQ414659
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351032228|gb|FQ460485.1|FQ460485
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351049572|gb|FQ429194.1|FQ429194
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351052197|gb|FQ450767.1|FQ450767
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
EST: gi|351055664|gb|FQ452129.1|FQ452129
EST:     TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAG                         GTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT
genomic: TAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatgg ... tgactttcagGTATTTCTCAGTGGGTAAATGACAAGGATGCAGATATTCTACGTATTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAAGGCATTTCCATCATTTAGAAAAGTGCATAAGAGACAGAATGATGGCTCTCTTCAGCTACATGGAGgttggtatggttactattaatgtctgtttgtaataaataaaagctacaatattagtttctatagttgagctattctataaagaatattcattgtttgata

- - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat