1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgttccttgatactacttcatataataccatgttctttagcatacacatctatctaatcacaaacctctcagccctttcctacctcaaatatataataattggatggaatgaaggtagttatggtgcactaaccacacgataatttgatttgtttggattctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTACTGGCAGGGGAGAAGTGGTCAGCTACAAAATGGATGAGGCAGAGATCAA
species | Vitis vinifera |
transcript | Vv05s0062g01220.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTAEST: gi|110427318|gb|EC993753.1|EC993753
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTA
EST: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTAEST: gi|349820405|gb|FQ406961.1|FQ406961
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTA
EST: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGAEST: gi|34319741|gb|CF372495.1|CF372495
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGA
EST: GGTTGTCTGTGGCCCCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTAEST: gi|110415165|gb|EC981042.1|EC981042
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTA
EST: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTAEST: gi|30297955|gb|CB974749.1|CB974749
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTA
EST: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTAEST: gi|351042433|gb|FQ442900.1|FQ442900
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTA
EST: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATG GGACTAGATGGACAATCAAACCCAA-TAGCATCCATGGCGGA
genomic: GGTTGTCTGTGGCACCAGTTAAAGGAAATGCAGTGCTTTTTTGGAGCATGgtttgttcct ... attctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGA
aggtagttatggtgcactaaccacacgataatttgatttgtttggattctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTACTGGCAGGGGAGAAGTGGTCAGCTACAAAATGGATGAGGCAGAGATCAA
ttctttc CT-rich tract
ataatttgatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttccttgatactacttcatataataccatgttctttagcatacacatctatctaatcacaaacctctcagccctttcctacctcaaatatataataattggatggaatgaaggtagttatggtgcactaaccacacgataatttgatttgtttggattctttcagGGACTAGATGGACAATCAGACCCAAATAGCATCCATGGCGGATGCGAAGTACTGGCAGGGGAGAAGTGGTCAGCTACAAAATGGATGAGGCAGAGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA