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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGCAGGAAGATGGTTTGGCTTTTGAAGATGAACTTGAAGACGAAGAAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTATCTTGTTTTAAGgtttttattttttatttatttttttatttttgtctttgttatttttttttattatgtgctaatgtttacatttgcttgttctgtatcctctacaaatttt...

Basic information

species Vitis vinifera
transcript Vv03s0063g01800.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406630|gb|CF212257.1|CF212257
EST:     AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTCTCTTGTTTTAAG                         GCCAAAGGTTTGAAGGTAACTTGCTTATTATGTTACTGCTCAGAANGGGAC
genomic: AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTATCTTGTTTTAAGgtttttattt ... attggatcagGCCAAAGGTTTGAAGGTAACTTGCTTATTATGTTACTGCTCAGAAGGGGAC
EST: gi|110687249|gb|EE064493.1|EE064493
EST:     AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTCTCTTGTTTTAAG                         GCCAAAGGTTTGAAGGTAACTTGCTTATTATGTTACTGCTCAGAAGGGGAC
genomic: AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTATCTTGTTTTAAGgtttttattt ... attggatcagGCCAAAGGTTTGAAGGTAACTTGCTTATTATGTTACTGCTCAGAAGGGGAC
EST: gi|351031129|gb|FQ444956.1|FQ444956
EST:     AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTCTCTTGTTTTTAG                         GCCCAAGGTTTGA
genomic: AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTATCTTGTTTTAAGgtttttattt ... attggatcagGCCAAAGGTTTGA
EST: gi|110364456|gb|EC924217.1|EC924217
EST:     AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTTTCTTGTTTTAAG                         GCCAAAGGTTTGAAGGTAACTTGCTTATTATGTTACTGCTCAGAAGGGGAC
genomic: AAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTATCTTGTTTTAAGgtttttattt ... attggatcagGCCAAAGGTTTGAAGGTAACTTGCTTATTATGTTACTGCTCAGAAGGGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTATGCAGGAAGATGGTTTGGCTTTTGAAGATGAACTTGAAGACGAAGAAGATTACTACCCAAGTTTGCCATTTGCTGCACTTTTATCTTGTTTTAAGgtttttattttttatttatttttttatttttgtctttgttatttttttttattatgtgctaatgtttacatttgcttgttctgtatcctctacaaatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC