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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCGAACAAAGAGCTTTCTGAATAATCTGAATGCTGCAATGGAGTTTATTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaaccttcttcatccttcctttgtttgtcattttccgttgattcccgagagaatagaagtagaaattttgaatctttgatttattttttttaa...

Basic information

species Vitis vinifera
transcript Vv03s0063g01800.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709641|gb|FC058425.1|FC058425
EST:     TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTG                         CCTGCGTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
genomic: TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaa ... gttggatcagCCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
EST: gi|37184652|gb|CF604006.1|CF604006
EST:     TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTG                         CCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
genomic: TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaa ... gttggatcagCCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
EST: gi|33406630|gb|CF212257.1|CF212257
EST:     TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTG                         CCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
genomic: TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaa ... gttggatcagCCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
EST: gi|110687249|gb|EE064493.1|EE064493
EST:     TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTG                         CCTGCGTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
genomic: TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaa ... gttggatcagCCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
EST: gi|351031129|gb|FQ444956.1|FQ444956
EST:     TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTG                         CCTGCGTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
genomic: TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaa ... gttggatcagCCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC
EST: gi|294965504|gb|GW839075.1|GW839075
EST:     TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTG                         CCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGTGGTGGACCTCTTGATC
genomic: TTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaa ... gttggatcagCCTGCTTTGTCGATTGGAAATGTAGGGCAGTTGGCGGTGGACCTCTTGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGCGAACAAAGAGCTTTCTGAATAATCTGAATGCTGCAATGGAGTTTATTGTAGAAGAAGGCAAACACCTCAACAACGATTGCTCCACTCTTGTTCTGgttctctcaaccttcttcatccttcctttgtttgtcattttccgttgattcccgagagaatagaagtagaaattttgaatctttgatttattttttttaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtagaaa