1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctgttccctggtggaccttaagtaaccaattagattaattgtccataattttctatgcattttgacaatgttgattgcttctttggttattttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGATGACTGTGAAAAACTAGGGTGGAAAAAATTACATGAATATAACCCTGCT
species | Vitis vinifera |
transcript | Vv03s0063g01800.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAG TGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGEST: gi|33406630|gb|CF212257.1|CF212257
genomic: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAGgtattcaaag ... attttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGG
EST: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAG TGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAACAGATGAEST: gi|110687249|gb|EE064493.1|EE064493
genomic: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAGgtattcaaag ... attttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGA
EST: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAG TGGTTCGCAGATATATTACATCTCCAGTGCCAATATGGATGGAACAGATGAEST: gi|351031129|gb|FQ444956.1|FQ444956
genomic: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAGgtattcaaag ... attttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGA
EST: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAG TGGTTCGCAGATATATTACATCTCCAGTGCCAATATGGATGGAACAGATGAEST: gi|110364456|gb|EC924217.1|EC924217
genomic: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAGgtattcaaag ... attttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGA
EST: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAG TGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAACAGATGA
genomic: GTGCTCTCTAGCCTAGATTTTGGGCAGTGGCAAAGGATTGATATGTCAAGgtattcaaag ... attttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGA
cataattttctatgcattttgacaatgttgattgcttctttggttattttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGATGACTGTGAAAAACTAGGGTGGAAAAAATTACATGAATATAACCCTGCT
ttattttttc CT-rich tract
tttggttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgttccctggtggaccttaagtaaccaattagattaattgtccataattttctatgcattttgacaatgttgattgcttctttggttattttttcagTGGTTCACAGATATATTACATCTCCAGTGCCAATATGGATGGAGCAGACGATGACTGTGAAAAACTAGGGTGGAAAAAATTACATGAATATAACCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- -tgttccc
- - - - - tggtgga
- - - - - - - - - - - - taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt