1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aattgactatttcttaatttgtttcttgtaaattgtatgagttcttattatttgtgaatgttttaaaagcacagtgatacagtttacttctggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGTTCTTAAG
species | Vitis vinifera |
transcript | Vv03s0063g01800.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAG CTTATGATTCATCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGEST: gi|37184652|gb|CF604006.1|CF604006
genomic: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAGgtgagcttct ... tggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
EST: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAG CTTATGATTCATCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGEST: gi|33406630|gb|CF212257.1|CF212257
genomic: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAGgtgagcttct ... tggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
EST: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAG CTTATGATTCATCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGEST: gi|110687249|gb|EE064493.1|EE064493
genomic: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAGgtgagcttct ... tggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
EST: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAG CTTATGATTCATCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGEST: gi|351031129|gb|FQ444956.1|FQ444956
genomic: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAGgtgagcttct ... tggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
EST: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAG CTTATGATTCATCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGEST: gi|294965504|gb|GW839075.1|GW839075
genomic: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAGgtgagcttct ... tggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
EST: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGACG CTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
genomic: TGATGCATATGGCCCTATACCACGAGGCGAGGTTGCTCTGCCTCTCGAAGgtgagcttct ... tggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAG
tattatttgtgaatgttttaaaagcacagtgatacagtttacttctggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGTTCTTAAG
tttacttct CT-rich tract
tgaatgttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgactatttcttaatttgtttcttgtaaattgtatgagttcttattatttgtgaatgttttaaaagcacagtgatacagtttacttctggtttgcagCTTATGATTCTTCTCTTAATAAATTGACACTTGTCCAACAAAGATCTCCAGTTCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagca