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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATGAAAATAGTCAGAAAAAGGTTTCTTTAGTAGGTCCTGCTCTCCACCCTTTCCTTGCgtaagtgttggtatttattatgcccccaacccaacacccagaaaggaaaatatttcctgtactaagacaattcaagctctgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g01350.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G03200.1 (Glycine max), 5'ss of exon 8
GGCAATGAAAATAGTCAGAAAAAGGTTTCTTTAGTAGGTCCTGCTCTCCACCCTTTCCTTGCgtaagtgttggtat---ttattatgcccccaacccaacacccaga----aaggaaaatatttcctgtacta------agacaattcaagctctgcag-----------------------------------------------------------------------
||||||||||||||||| || |||||||||||  | ||| ||||||| || |||||| | |||||||| ||  |||   | ||||     |  |  ||   | |  |    |   |||| | ||| |   | |      |||   |    ||| |||                                                                         
GGCAATGAAAATAGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtcttaatatgaatcattaactttctgaatcagatctcttatttcatataaaaaacttcgtaccccattgcccagaggctcttcgctatgcgaaggtatgggggagggatgttgtacgcagccttaccttatttcatatgctaagcaatattttatttttccag