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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAG

Basic information

species Vitis vinifera
transcript Vv02s0025g01350.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA02G45610.1 (Glycine max), 3'ss of exon 11
gtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgc---atctggattttgtgcactaactcacactgaccttt-ctgtttgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAG
||||||  |    ||| || |||       ||||  | || |   ||      || |  ||   || || |     ||    |||   ||     |  |||| |   |    |    ||||  || || ||    || || | |||  |    ||       | |      |||||  || || ||||||| ||||| ||||| |||||||| || |||||||||||||| || || |||||||
gtttgtctatcaactggccctct-------ttttcccatatccactg------ttatatttcatgttattaccatttctgctgtctttacttccca-gcaatgtcactctatagatgagtaacaccttttgactaatttgaagttta-gtctgaatgtttgttcattaaaactgttactgttttagGTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 11
gtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAG
              | |   | | |||     ||||  |   |          || || ||   |  || |     ||   ||||   | | ||   |  |   ||| |       |||  ||| |     || ||    ||||   ||| | | | ||||         ||  || || ||||||| ||||||||||| |||||||| || |||||||| ||||| || || |||||||
-------------gttcatcttttaactggcctttttctcatatccac---tgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatag---aagaccaata----acacct----tttg---acttattaagactg---------ttcatgttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 3'ss of exon 12
gtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAG
                               ||| |  |||    ||  |||| | | | |     || | || |  | |   |   |  |     | |       | |  ||      || | ||     ||      ||||||| |||   |     |    |||||  || |  | |||||||||||||| |||||||||||||| |||||||| || || || || ||||||||||
------------------------------gtttgttctactctatgc-tacaattttcata----aacccattgtgctattat---ggtagatattccctcgccgtattagatct---tatagcaactgaca----agttttgtg-actgtttagttgtatggtttcttcttttattgcagGTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110420711|gb|EC986990.1|EC986990
EST:     GTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAG                         GTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCA
genomic: GTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGgtttgtacaa ... tgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAG
                                   cctttctgttt  CT-rich tract
           attttgt  TA-rich tract