Sequence
atgc intronic sequence ATGC exonic sequenceGCACAAGGTCTTCGCAGGTGTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGgtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G45610.1 (Glycine max), 5'ss of exon 11
GCACAAGGTCTTCGCAGGTGTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGgtttgt---acaatttctgcccttctcaacaaattttttcttaccacttgagta--cattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggat-tttgtgcactaactcacactgacctttctgtttgtgcttcag
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GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATCCCAGGCTAGATATGGAGgtttgtctatcaactggccctctttttcccatatccactgttatatttcatgttattaccatttctgctgtctttacttcccagcaatgtcactctatagatgagtaacaccttttgact--aatttgaagtttag--tctgaatgtttgttcattaaa----actg---ttactgttttag------
upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G03200.1 (Glycine max), 5'ss of exon 11
GCACAAGGTCTTCGCAGGTGTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGgtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagta--cattgtccttggggtaatcaatcggtc---cagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcag
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GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATCCCAGGCTAGATATGGAGgttcatcttttaactggcctttttctcatatccactgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatagaagaccaataacaccttttgacttattaagactgttcatgttttag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110420711|gb|EC986990.1|EC986990EST: GTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAG GTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCA
genomic: GTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGgtttgtacaa ... tgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACAAGGTCTTCGCAGGTGTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGgtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcag
- - - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - AAGAGA