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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaccatattctgagcagagtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtgttttgacttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA

Basic information

species Vitis vinifera
transcript Vv02s0025g01350.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g29010.2 (Oryza sativa), 3'ss of exon 4
gtaagcaaaccatattctgagcagagtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtgttttgacttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA
||||| || |   |        | | |   |   || | |||| ||   |||  | |   |    || ||    |   |  | | ||| |   ||  ||||||||| ||||||| ||||||||| | ||||||||||| || |||||||| ||| |||| ||||||||| |||||||  | ||||| ||| |  | ||| 
gtaagaaacctgca--------aaatttctcctgtggattttatttgtatttttc-atcaagcatctgttccaagctgtgaggcatttcaacatc-acagGATATATCAGATTACGATGATGTTCGCTATTGCTGCTCTGGAGCTGATGTCTGCATGGAGTGCTGGCCTTTAATGACCATTGCTATCAAAATCTTGGATG

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G45610.1 (Glycine max), 3'ss of exon 4
gtaagcaaaccatattctgagcag-agtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtgttttgac-ttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA
           | ||| |  ||   |||   ||| || |   |  |||  | |   | | |  |    |||||      |||    ||||   |||||| |||||||  |||||||||||||||||||||| ||||| || ||||| |||||||| ||||  ||||||||  | |||||  |||| || |||||||||||||
--------gtaagatttttcgcttcagtctccaagtgaagcct--ttagctattgtggccttcttcaaatttgacaccctttcttattttggctttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATA

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 4
gtaagcaaaccatattctgagcagagtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtg-ttttgacttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTG--CTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA------------
           | ||| |      ||      | || |   |  |||  | |   | | |  |    |||||      |||||  |||| | |||||  |||||||  |||||||||||||||||||||| ||||| || ||||  |||||||||| ||||  ||||||||  | |||||   ||| || |||||||||||||            
--------gtaagattttttcttcagccttggagtgaagcct--ttagctattgtggccttcttaacatttgacacccttttgtattttgagtttctataggatatgtcagattatgatgatgttagATACTGCTGTTCGGGTGCGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTACAGCGATCAAAGTGATTGATACTGCCTTAAGAG

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagca--aaccatattctgagcagagtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtgttttgacttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA
|| ||    ||     |  | || |    | | |||||   |||      ||||     ||||     | | | |  ||  |||| | |    ||||  |||||||||||||||||||||||||||||||| || || || || || ||||||||||   | ||||||||| |||||||||| ||||| ||||| |||||||
gtgagttttaatatcttattaagaatttcgtataattg-gttttgt----gtttttgttcttacgtagtttgttgcttgacttgaatatattgtttcctcagGATATAACAGATTATGATGATGTTAGATACTGTTGTTCGGGAGCCGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtttaacgacttattggctatttggtgtgttttgacttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA
                                       ttttaat  putative branch site (score: 3)
                                             ttttctgc  CT-rich tract
                                ttttgacttttaattt  TA-rich tract