Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATACTGCCCTCAGAGgtagagtatatatgtgtatgcattcaactgagtataacgtgtttggtgttcttgtcttaaacatttcatgaatcccttttgttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g01350.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g29010.2 (Oryza sativa), 5'ss of exon 5
TATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATACTGCCCTCAGAGgtagagtatatatgtgtatgcattcaactgagtataacgtgtttggtgttcttgtcttaaacatttcatgaatcccttttgttgcag---------------------------------------------------------------
|| ||||||||| | ||||||||||| || |||||||| ||| |||| ||||||||| |||||||  | ||||| ||| |  | ||| || | || ||||| |   | | | ||   ||||| | || | |  | | | ||         || |  || |        | | |  |||   ||||||                                                               
TACGATGATGTTCGCTATTGCTGCTCTGGAGCTGATGTCTGCATGGAGTGCTGGCCTTTAATGACCATTGCTATCAAAATCTTGGATGCTTCACTTAGAGgcatgttgttt-tgca-atgcaattaattaaacaca-catgc---aaacactcgcttttatttcagtttaattgacttgaattgcagatctttagtcaactattttcttggttagtttgacttgtaacaattgaaagtatgtgtttacag

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G45610.1 (Glycine max), 5'ss of exon 5
TATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATACTGCCCTCAGAGgtag-agtatatatgt-gtatgcattcaactgagtataacgtgtttggtgttc---ttgtcttaaacatttcatgaatcccttttgttgcag--------
||||||||||||||||| ||||| || ||||| |||||||| ||||  ||||||||  | |||||  |||| || |||||||||||||||||| | |||||||  | | |  || |  | ||   ||     |||    |   | ||   ||    ||||     |||||  |  ||    | |||    |         
TATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATACTGCCTTAAGAGgtactattttgcatcttatttgatatcggagaagtggtgcaattatgtcatttatattgttcattacattcaaaaaacaattgttgaaataataagatag

upper sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 6
TATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATACTGCCCTCAGAGgtagagtatatatgtgtatg-cattcaactg---agtataac----gtgtttggtgttcttgtc-ttaaacatttc-atgaatcccttttgt---tgcag
||||||||||||||||| || || || || || ||||||||||   | ||||||||| |||||||||| ||||| ||||| ||||||||| || | |||||||    | || | |   |  |  |||| ||     || |||    || | | |||||| ||   ||   |||  | |||| |   | |  |   |  ||
TATGATGATGTTAGATACTGTTGTTCGGGAGCCGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATACTTCCTTAAGAGgtatcaaaaatgttttcttaactctcaaatgtatgatacaactagagtttgtagtgttcctgagattttccatccctatgagtttttgtaatatttatag