1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtttgatttcaatctctcgctttttttttgtggaattcatggttttggatgggtgtttatagATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAAGCAAAAAGAATGTGGAGGTTTGGCTAAAGCTTCACACACTATAGAGAAT
species | Selaginella moellendorffii |
transcript | EFJ23724 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAG ATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAAEST: gi|169109370|gb|FE514094.1|FE514094
genomic: CTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAGgtttgtttga ... gtgtttatagATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAA
EST: CTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAG ATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAAEST: gi|169037545|gb|FE446286.1|FE446286
genomic: CTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAGgtttgtttga ... gtgtttatagATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAA
EST: CTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAG ATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAA
genomic: CTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAGgtttgtttga ... gtgtttatagATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAA
ttcaatctctcgctttttttttgtggaattcatggttttggatgggtgtttatagATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAAGCAAAAAGAATGTGGAGGTTTGGCTAAAGCTTCACACACTATAGAGAAT
tttttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttgatttcaatctctcgctttttttttgtggaattcatggttttggatgggtgtttatagATCCACTTTGTACTCAAGAATCCAGACGCTTATGAAGCGTGGCTAGACGAAGCAAAAAGAATGTGGAGGTTTGGCTAAAGCTTCACACACTATAGAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG