1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtttcatagaaaaactacaaaagctcaagagcttgcattcaccagGTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAG
species | Selaginella moellendorffii |
transcript | EFJ23724 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGGCATTAAGTACATCGCATTTCCAGCTTTGTCTTGCGAGCTCTACGG GTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAAEST: gi|169109370|gb|FE514094.1|FE514094
genomic: AATGGCATTAAGTACATCGCATTTCCAGCTTTGTCTTGCGAGCTCTACGGgtatgtttca ... cattcaccagGTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAA
EST: AATGGCATTAAGTACATCGCATTTCCAGCTTTGTCTTGCGAGCTCTACGG GTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAAEST: gi|169037545|gb|FE446286.1|FE446286
genomic: AATGGCATTAAGTACATCGCATTTCCAGCTTTGTCTTGCGAGCTCTACGGgtatgtttca ... cattcaccagGTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAA
EST: AATGGCATTAAGTACATCGCATTTCCAGCTTTGTCTTGCGAGCTCTACGG GTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAA
genomic: AATGGCATTAAGTACATCGCATTTCCAGCTTTGTCTTGCGAGCTCTACGGgtatgtttca ... cattcaccagGTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAA
gtatgtttcatagaaaaactacaaaagctcaagagcttgcattcaccagGTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAG
atagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcatagaaaaactacaaaagctcaagagcttgcattcaccagGTATCCCCACGACGAGGGAGCTGAGGTTGGTCTTACGGCTTTGAGGAAGAACTGGGCTGGTTTTCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC