1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTACGAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttctactatgatgatctggagctggattttggcattctctaaacttcttcgttcttttttttctcag
species | Selaginella moellendorffii |
transcript | EFJ23724 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGT TGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCCEST: gi|169108869|gb|FE512293.1|FE512293
genomic: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttct ... tttttctcagTGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCC
EST: AAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGT TGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCCEST: gi|169109370|gb|FE514094.1|FE514094
genomic: AAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttct ... tttttctcagTGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCC
EST: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGT TGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCCEST: gi|169037545|gb|FE446286.1|FE446286
genomic: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttct ... tttttctcagTGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCC
EST: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGT TGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCCEST: gi|169109371|gb|FE514095.1|FE514095
genomic: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttct ... tttttctcagTGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCATTTCC
EST: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGT TGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCA
genomic: GAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttct ... tttttctcagTGCTGCTTTGAATCTGGCAACTTCTAATGGCATTAAGTACATCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTACGAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTATGTgtaagtttctactatgatgatctggagctggattttggcattctctaaacttcttcgttcttttttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA