1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagctctctctttttgatcttagagtcttgtccacttcattcttcctttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTACGAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTAT
species | Selaginella moellendorffii |
transcript | EFJ23724 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAG GGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTAEST: gi|169109370|gb|FE514094.1|FE514094
genomic: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAGgtaaagctct ... tttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTA
EST: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAG GGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTAEST: gi|169037545|gb|FE446286.1|FE446286
genomic: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAGgtaaagctct ... tttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTA
EST: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAG GGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTAEST: gi|169109371|gb|FE514095.1|FE514095
genomic: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAGgtaaagctct ... tttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTA
EST: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAG GGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTA
genomic: GTAGCACCTCAAGGGATCAAGTGCGAGGTCGGTCAGGCTGTGATCACAAGgtaaagctct ... tttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTA
agctctctctttttgatcttagagtcttgtccacttcattcttcctttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTACGAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTAT
ttttgat putative branch site (score: 41)
tcttgtccacttcatt putative PPT
tttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagctctctctttttgatcttagagtcttgtccacttcattcttcctttcttgcagGGGTTTTAATCTCCAGGCGTCTCGTGTGATCCACGCTGTTGGTCCTGTTTACGAGGAGAAAAATCGAGACGAGTCCGAGAAAATGCTAACCAAGGCCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA