1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACGATGAGCCCGTTGATACGATTTTGCAACGTTTTGTGGAGCTGGGAATTCCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaagatactttttttttaatcctgctggtttcgactaacgtcgccgtatatgcag
species | Selaginella moellendorffii |
transcript | EFJ07706 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169070025|gb|FE476494.1|FE476494
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: GACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169057396|gb|FE465700.1|FE465700
genomic: GACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: GCTTTAAGAGTCAAGGAAACTCCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169019341|gb|FE427651.1|FE427651
genomic: GCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169059367|gb|FE467509.1|FE467509
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACACCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169029314|gb|FE439442.1|FE439442
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169070026|gb|FE476495.1|FE476495
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169019340|gb|FE427650.1|FE427650
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169050567|gb|FE459635.1|FE459635
genomic: CCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCNTGCTTTAAGAGTCAAGGAAACACCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169038570|gb|FE446895.1|FE446895
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: ACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169051157|gb|FE458691.1|FE458691
genomic: ACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACACCGACAGAATCAAC GTATCAACAATTTGAAGAAGCANGCACGGACTTGGGACAACTGCTTTCTCEST: gi|169114973|gb|FE516338.1|FE516338
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTC
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACACCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169111537|gb|FE510397.1|FE510397
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAAC GTATCAACAA-TTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCAEST: gi|169114972|gb|FE516337.1|FE516337
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
EST: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACACCGACAGAATCAAC GTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
genomic: CCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaaga ... gtatatgcagGTATCAACAATTTGAAGAAGCAGGCACGGACTTGGGACAACTGCTTTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGATGAGCCCGTTGATACGATTTTGCAACGTTTTGTGGAGCTGGGAATTCCAACTCCTCTTCCTGCTTTAAGAGTCAAGGAAACTCCGACAGAATCAACgtatagaagatactttttttttaatcctgctggtttcgactaacgtcgccgtatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA